RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SLC27A3Q5K4L6 730 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 CYB5RLQ6IPT4 315 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 AGBL1Q96MI9 1066 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 ESYT1Q9BSJ8 1104 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 TCOF1Q13428 1488 aaKnown RBP8.9□□□□□ -0.98
USP28-202ENST00000535607 BMP2P12643 396 aa8.9□□□□□ -0.98
USP28-202ENST00000535607 ARID4AP29374 1257 aaPredicted RBP8.9□□□□□ -0.98
USP28-202ENST00000535607 LAPTM4AQ15012 233 aa8.9□□□□□ -0.98
USP28-202ENST00000535607 MEIOBQ8N635 442 aa8.9□□□□□ -0.98
USP28-202ENST00000535607 PRIMPOLQ96LW4 560 aa8.9□□□□□ -0.98
USP28-202ENST00000535607 ZNF395Q9H8N7 513 aaPredicted RBP8.9□□□□□ -0.98
USP28-202ENST00000535607 MAP3K4Q9Y6R4 1608 aa8.9□□□□□ -0.99
USP28-202ENST00000535607 GPATCH8Q9UKJ3 1502 aaKnown RBP8.9□□□□□ -0.99
USP28-202ENST00000535607 SETD5Q9C0A6 1442 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 A6NJY4 79 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 SMTNP53814 917 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 TMEM214Q6NUQ4 689 aaKnown RBP8.89□□□□□ -0.99
USP28-202ENST00000535607 TNS4Q8IZW8 715 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 GAS2L2Q8NHY3 880 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 SCG3Q8WXD2 468 aaKnown RBP8.89□□□□□ -0.99
USP28-202ENST00000535607 POLMQ9NP87 494 aaPredicted RBP8.89□□□□□ -0.99
USP28-202ENST00000535607 PTPN23Q9H3S7 1636 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 PLEKHH2Q8IVE3 1493 aa8.89□□□□□ -0.99
USP28-202ENST00000535607 PPP1R12BO60237 982 aaPredicted RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 LGR5O75473 907 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 DGAT1O75907 488 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 DKK1O94907 266 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 STAU1O95793 577 aaKnown RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 SSFA2P28290 1259 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 DDX10Q13206 875 aaKnown RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 CTC1Q2NKJ3 1217 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 GNASQ5JWF2 1037 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 LINC00528Q8N1L1 170 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 XAGE2Q96GT9 111 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 ZSCAN10Q96SZ4 725 aaPredicted RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 KLF16Q9BXK1 252 aaPredicted RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 PPP4R2Q9NY27 417 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 CXXC1Q9P0U4 656 aaPredicted RBP8.88□□□□□ -0.99
USP28-202ENST00000535607 CDC42BPBQ9Y5S2 1711 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 PLCH2O75038 1416 aa8.88□□□□□ -0.99
USP28-202ENST00000535607 ARHGAP5Q13017 1502 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 NRG2O14511 850 aaPredicted RBP8.87□□□□□ -0.99
USP28-202ENST00000535607 PTCD1O75127 700 aaKnown RBP8.87□□□□□ -0.99
USP28-202ENST00000535607 IL2RAP01589 272 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 IGFBP4P22692 258 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 FAM69CQ0P6D2 419 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 SLC4A9Q96Q91 983 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 PODXL2Q9NZ53 605 aa8.87□□□□□ -0.99
USP28-202ENST00000535607 CAMSAP2Q08AD1 1489 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 FOXO3O43524 673 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 C6orf118Q5T5N4 469 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 SLC9A9Q8IVB4 645 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 CABP1Q9NZU7 370 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 ZNF232Q9UNY5 417 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 IVNS1ABPQ9Y6Y0 642 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 DNMT1P26358 1616 aaKnown RBP8.86□□□□□ -0.99
USP28-202ENST00000535607 ARHGEF5Q12774 1597 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 ATAD2Q6PL18 1390 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 RAB3GAP2Q9H2M9 1393 aa8.86□□□□□ -0.99
USP28-202ENST00000535607 ABCC1P33527 1531 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 CROCC2H7BZ55 1655 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 SHANK2Q9UPX8 1470 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 AXIN1O15169 862 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 DEKP35659 375 aaKnown RBP8.85□□□□□ -0.99
USP28-202ENST00000535607 PSMA6P60900 246 aaKnown RBP8.85□□□□□ -0.99
USP28-202ENST00000535607 CENPCQ03188 943 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 C1orf216Q8TAB5 229 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 MKNK1Q9BUB5 465 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 TSPAN10Q9H1Z9 355 aaPredicted RBP8.85□□□□□ -0.99
USP28-202ENST00000535607 SCHIP1Q9P0W5 487 aaPredicted RBP8.85□□□□□ -0.99
USP28-202ENST00000535607 SAMD9LQ8IVG5 1584 aa8.85□□□□□ -0.99
USP28-202ENST00000535607 TEX14Q8IWB6 1497 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 NEO1Q92859 1461 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 CDK2AP1O14519 115 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 WEE1P30291 646 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 GPC1P35052 558 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 MRPL14Q6P1L8 145 aaKnown RBP8.84□□□□□ -0.99
USP28-202ENST00000535607 GZF1Q9H116 711 aaPredicted RBP8.84□□□□□ -0.99
USP28-202ENST00000535607 KIAA1107Q9UPP5 1409 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 KIF13AQ9H1H9 1805 aa8.84□□□□□ -0.99
USP28-202ENST00000535607 FANCAO15360 1455 aa8.83□□□□□ -1
USP28-202ENST00000535607 AKNAQ7Z591 1439 aa8.83□□□□□ -1
USP28-202ENST00000535607 ABL1P00519 1130 aa8.83□□□□□ -1
USP28-202ENST00000535607 INSM2Q96T92 566 aaPredicted RBP8.83□□□□□ -1
USP28-202ENST00000535607 NIFKQ9BYG3 293 aaKnown RBP8.83□□□□□ -1
USP28-202ENST00000535607 CD109Q6YHK3 1445 aa8.82□□□□□ -1
USP28-202ENST00000535607 SERTM1A2A2V5 107 aa8.82□□□□□ -1
USP28-202ENST00000535607 SPINT1O43278 529 aa8.82□□□□□ -1
USP28-202ENST00000535607 ANP32AP39687 249 aaKnown RBP8.82□□□□□ -1
USP28-202ENST00000535607 MTFR1Q15390 333 aa8.82□□□□□ -1
USP28-202ENST00000535607 OCLNQ16625 522 aa8.82□□□□□ -1
USP28-202ENST00000535607 TBCELQ5QJ74 424 aa8.82□□□□□ -1
USP28-202ENST00000535607 RHBDD1Q8TEB9 315 aa8.82□□□□□ -1
USP28-202ENST00000535607 CFDP1Q9UEE9 299 aaPredicted RBP8.82□□□□□ -1
USP28-202ENST00000535607 NOP58Q9Y2X3 529 aaKnown RBP8.82□□□□□ -1
USP28-202ENST00000535607 CCDC141Q6ZP82 1450 aa8.82□□□□□ -1
USP28-202ENST00000535607 MAST1Q9Y2H9 1570 aa8.82□□□□□ -1
USP28-202ENST00000535607 ADGBQ8N7X0 1667 aa8.81□□□□□ -1
USP28-202ENST00000535607 SYCP2Q9BX26 1530 aa8.81□□□□□ -1
USP28-202ENST00000535607 AVPP01185 164 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms