RNA–Protein interactions for RNA: ENST00000535202.1

SFSWAP-202, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-202ENST00000535202 NGEFQ8N5V2 710 aa11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 TTLL6Q8N841 843 aa11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 ZNF622Q969S3 477 aaKnown RBP eCLIP11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 BRIP1Q9BX63 1249 aa11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 RNF181Q9P0P0 153 aa11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 TSPYL4Q9UJ04 414 aa11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 RRP7AQ9Y3A4 280 aaKnown RBP11.23□□□□□ -0.61
SFSWAP-202ENST00000535202 TMPOP42166 694 aaKnown RBP11.22□□□□□ -0.61
SFSWAP-202ENST00000535202 RASSF7Q02833 373 aa11.22□□□□□ -0.61
SFSWAP-202ENST00000535202 LMOD3Q0VAK6 560 aa11.22□□□□□ -0.61
SFSWAP-202ENST00000535202 NEUROD2Q15784 382 aa11.22□□□□□ -0.61
SFSWAP-202ENST00000535202 CLEC4GQ6UXB4 293 aa11.22□□□□□ -0.61
SFSWAP-202ENST00000535202 NBPF5PQ86XG9 351 aaPredicted RBP11.21□□□□□ -0.61
SFSWAP-202ENST00000535202 PRKRIP1Q9H875 184 aaPredicted RBP11.21□□□□□ -0.61
SFSWAP-202ENST00000535202 ZNF219Q9P2Y4 722 aaPredicted RBP11.21□□□□□ -0.61
SFSWAP-202ENST00000535202 PDZRN3Q9UPQ7 1066 aa11.21□□□□□ -0.61
SFSWAP-202ENST00000535202 NIP7Q9Y221 180 aaKnown RBP eCLIP11.21□□□□□ -0.61
SFSWAP-202ENST00000535202 CCDC88AQ3V6T2 1871 aa11.21□□□□□ -0.62
SFSWAP-202ENST00000535202 NUP98P52948 1817 aa11.21□□□□□ -0.62
SFSWAP-202ENST00000535202 FAM177BA6PVY3 158 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 KIF3CO14782 793 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 MYL6BP14649 208 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 HLFQ16534 295 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 ARFGEF2Q9Y6D5 1785 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 TIAM2Q8IVF5 1701 aa11.2□□□□□ -0.62
SFSWAP-202ENST00000535202 KIF6Q6ZMV9 814 aa11.19□□□□□ -0.62
SFSWAP-202ENST00000535202 RUNDC1Q96C34 613 aa11.19□□□□□ -0.62
SFSWAP-202ENST00000535202 NMRK2Q9NPI5 230 aa11.19□□□□□ -0.62
SFSWAP-202ENST00000535202 ADAMTS8Q9UP79 889 aa11.19□□□□□ -0.62
SFSWAP-202ENST00000535202 SLX4Q8IY92 1834 aa11.19□□□□□ -0.62
SFSWAP-202ENST00000535202 MAP3K15Q6ZN16 1313 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 RGL2O15211 777 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 C21orf2O43822 256 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 SRGNP10124 158 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 EIF2S2P20042 333 aaKnown RBP11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 LMNB1P20700 586 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 STYK1Q6J9G0 422 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 TPTE2Q6XPS3 522 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 TTLL7Q6ZT98 887 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 CNKSR1Q969H4 720 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 MASTLQ96GX5 879 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 ZBTB3Q9H5J0 574 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 LAS1LQ9Y4W2 734 aaKnown RBP11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 FER1L6Q2WGJ9 1857 aa11.18□□□□□ -0.62
SFSWAP-202ENST00000535202 TNRC6CQ9HCJ0 1690 aaKnown RBP11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 ERBB4Q15303 1308 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 KDM2BQ8NHM5 1336 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 ERVV-1B6SEH8 477 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 NFKBIEO00221 500 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 GTF2E1P29083 439 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 PRELPP51888 382 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 BABAM1Q9NWV8 329 aa11.17□□□□□ -0.62
SFSWAP-202ENST00000535202 PRKCSHP14314 528 aaPredicted RBP11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 GPTP24298 496 aa11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 PRPF40BQ6NWY9 871 aaKnown RBP11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 C16orf71Q8IYS4 520 aaPredicted RBP11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 NECTIN2Q92692 538 aa11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 TRIM35Q9UPQ4 493 aa11.16□□□□□ -0.62
SFSWAP-202ENST00000535202 DICER1Q9UPY3 1922 aaKnown RBP11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 ZC3H4Q9UPT8 1303 aaKnown RBP11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 ANXA1P04083 346 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 NPR1P16066 1061 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 HSPA6P17066 643 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 NUTM1Q86Y26 1132 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 NYXQ9GZU5 481 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 RRAGCQ9HB90 399 aa11.15□□□□□ -0.62
SFSWAP-202ENST00000535202 ABCC12Q96J65 1359 aa11.15□□□□□ -0.63
SFSWAP-202ENST00000535202 UBN2Q6ZU65 1347 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 TOMM70O94826 608 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 PDIA6Q15084 440 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 KRT24Q2M2I5 525 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 PROSER3Q2NL68 480 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 ERFEQ4G0M1 354 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 SOGA3Q5TF21 947 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 TAOK3Q9H2K8 898 aa11.14□□□□□ -0.63
SFSWAP-202ENST00000535202 ANKRD36CQ5JPF3 1778 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 KLRG2A4D1S0 409 aaPredicted RBP11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 ZNF316A6NFI3 1004 aaPredicted RBP11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 GLTPD2A6NH11 291 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 CHL1O00533 1208 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 AIMP1Q12904 312 aaKnown RBP11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 CCDC93Q567U6 631 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 SUSD4Q5VX71 490 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 GIGYF2Q6Y7W6 1299 aaKnown RBP11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 LRP10Q7Z4F1 713 aa11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 IBTKQ9P2D0 1353 aaPredicted RBP11.13□□□□□ -0.63
SFSWAP-202ENST00000535202 LTBP3Q9NS15 1303 aa11.12□□□□□ -0.63
SFSWAP-202ENST00000535202 APAF1O14727 1248 aa11.12□□□□□ -0.63
SFSWAP-202ENST00000535202 ZNF34Q8IZ26 560 aa11.12□□□□□ -0.63
SFSWAP-202ENST00000535202 RBM46Q8TBY0 533 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-202ENST00000535202 NTSR2O95665 410 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 ALDH1B1P30837 517 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 PARP10Q53GL7 1025 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 OLFM4Q6UX06 510 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 COPS6Q7L5N1 327 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 PPP1R42Q7Z4L9 355 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 XAGE3Q8WTP9 111 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 C7orf43Q8WVR3 580 aa11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 RPGRQ92834 1020 aaKnown RBP11.11□□□□□ -0.63
SFSWAP-202ENST00000535202 CFAP44Q96MT7 982 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms