RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 C2CD5Q86YS7 1000 aa13.63□□□□□ -0.23
CSDE1-217ENST00000534699 CNGB1Q14028 1251 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-217ENST00000534699 CNBD1Q8NA66 436 aa13.63□□□□□ -0.23
CSDE1-217ENST00000534699 COL11A2P13942 1736 aaPredicted RBP13.62□□□□□ -0.23
CSDE1-217ENST00000534699 PRR5LQ6MZQ0 368 aa13.62□□□□□ -0.23
CSDE1-217ENST00000534699 KDM2BQ8NHM5 1336 aa13.62□□□□□ -0.23
CSDE1-217ENST00000534699 KIF6Q6ZMV9 814 aa13.62□□□□□ -0.23
CSDE1-217ENST00000534699 MASTLQ96GX5 879 aa13.62□□□□□ -0.23
CSDE1-217ENST00000534699 MAP3K15Q6ZN16 1313 aa13.62□□□□□ -0.23
CSDE1-217ENST00000534699 HSP90AB3PQ58FF7 597 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 CC2D2BQ6DHV5 1058 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 TBC1D2BQ9UPU7 963 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 CHL1O00533 1208 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 PARP10Q53GL7 1025 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 TSPYL4Q9UJ04 414 aa13.61□□□□□ -0.23
CSDE1-217ENST00000534699 NBPF26B4DH59 902 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 NPR1P16066 1061 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 DCTN1Q14203 1278 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 NBPF10Q6P3W6 841 aaKnown RBP13.6□□□□□ -0.23
CSDE1-217ENST00000534699 NBPF15Q8N660 670 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 TIAM2Q8IVF5 1701 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 LMNB1P20700 586 aa13.6□□□□□ -0.23
CSDE1-217ENST00000534699 WDR90Q96KV7 1748 aa13.59□□□□□ -0.23
CSDE1-217ENST00000534699 ALDH1B1P30837 517 aa13.59□□□□□ -0.23
CSDE1-217ENST00000534699 NBPF5PQ86XG9 351 aaPredicted RBP13.59□□□□□ -0.23
CSDE1-217ENST00000534699 NGEFQ8N5V2 710 aa13.59□□□□□ -0.23
CSDE1-217ENST00000534699 RBM46Q8TBY0 533 aaKnown RBP13.58□□□□□ -0.23
CSDE1-217ENST00000534699 SRGNP10124 158 aa13.58□□□□□ -0.24
CSDE1-217ENST00000534699 CHRNA5P30532 468 aa13.58□□□□□ -0.24
CSDE1-217ENST00000534699 CCDC88AQ3V6T2 1871 aa13.58□□□□□ -0.24
CSDE1-217ENST00000534699 C9orf131Q5VYM1 1079 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 FSTL1Q12841 308 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 CCDC27Q2M243 656 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 GIGYF2Q6Y7W6 1299 aaKnown RBP13.57□□□□□ -0.24
CSDE1-217ENST00000534699 PPP1R42Q7Z4L9 355 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 CFAP44Q96MT7 982 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 VPS33BQ9H267 617 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 ZNF34Q8IZ26 560 aa13.57□□□□□ -0.24
CSDE1-217ENST00000534699 NIP7Q9Y221 180 aaKnown RBP eCLIP13.57□□□□□ -0.24
CSDE1-217ENST00000534699 TOMM70O94826 608 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 DDX21Q9NR30 783 aaKnown RBP eCLIP13.56□□□□□ -0.24
CSDE1-217ENST00000534699 IFT57Q9NWB7 429 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 KIF3CO14782 793 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 NPHP1O15259 732 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 SLC10A5Q5PT55 438 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 RTKN2Q8IZC4 609 aa13.56□□□□□ -0.24
CSDE1-217ENST00000534699 CACNA1FO60840 1977 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 HOXA10P31260 410 aaPredicted RBP13.55□□□□□ -0.24
CSDE1-217ENST00000534699 GNAI1P63096 354 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 CRY2Q49AN0 593 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 BICDL1Q6ZP65 573 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 TRIM35Q9UPQ4 493 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 SLX4Q8IY92 1834 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 ZNF853P0CG23 659 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 CCDC93Q567U6 631 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 RNF181Q9P0P0 153 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 ADAMTS8Q9UP79 889 aa13.55□□□□□ -0.24
CSDE1-217ENST00000534699 ZNF330Q9Y3S2 320 aaPredicted RBP13.55□□□□□ -0.24
CSDE1-217ENST00000534699 HSP90B1P14625 803 aaKnown RBP13.54□□□□□ -0.24
CSDE1-217ENST00000534699 LRP10Q7Z4F1 713 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 CRAMP1Q96RY5 1269 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 IL16Q14005 1332 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 CACNA1SQ13698 1873 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 PRAMEF22A3QJZ6 481 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 TMC4Q7Z404 712 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 SCN4AP35499 1836 aa13.54□□□□□ -0.24
CSDE1-217ENST00000534699 LAMB2P55268 1798 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 ZNF622Q969S3 477 aaKnown RBP eCLIP13.53□□□□□ -0.24
CSDE1-217ENST00000534699 HYPKQ9NX55 129 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 GLTPD2A6NH11 291 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 HSPA6P17066 643 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 DPY19L2Q6NUT2 758 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 C7orf43Q8WVR3 580 aa13.53□□□□□ -0.24
CSDE1-217ENST00000534699 PDIA6Q15084 440 aa13.52□□□□□ -0.24
CSDE1-217ENST00000534699 TAOK3Q9H2K8 898 aa13.52□□□□□ -0.24
CSDE1-217ENST00000534699 DBF4Q9UBU7 674 aaPredicted RBP13.52□□□□□ -0.24
CSDE1-217ENST00000534699 ZNF316A6NFI3 1004 aaPredicted RBP13.52□□□□□ -0.25
CSDE1-217ENST00000534699 APLP1P51693 650 aa13.52□□□□□ -0.25
CSDE1-217ENST00000534699 C16orf71Q8IYS4 520 aaPredicted RBP13.52□□□□□ -0.25
CSDE1-217ENST00000534699 MIS18AQ9NYP9 233 aa13.52□□□□□ -0.25
CSDE1-217ENST00000534699 GTF2E1P29083 439 aaPredicted RBP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 FKBP4Q02790 459 aaKnown RBP eCLIP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 PRPF40BQ6NWY9 871 aaKnown RBP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 RBM17Q96I25 401 aaKnown RBP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 PSMD1Q99460 953 aa13.51□□□□□ -0.25
CSDE1-217ENST00000534699 NFKBIEO00221 500 aa13.51□□□□□ -0.25
CSDE1-217ENST00000534699 TRIM28Q13263 835 aaKnown RBP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 RRP7AQ9Y3A4 280 aaKnown RBP13.51□□□□□ -0.25
CSDE1-217ENST00000534699 HLFQ16534 295 aa13.5□□□□□ -0.25
CSDE1-217ENST00000534699 PLBD2Q8NHP8 589 aa13.5□□□□□ -0.25
CSDE1-217ENST00000534699 THUMPD2Q9BTF0 503 aaKnown RBP13.5□□□□□ -0.25
CSDE1-217ENST00000534699 SENP3-EIF4A1A0A087X0R7 540 aa13.5□□□□□ -0.25
CSDE1-217ENST00000534699 UTP14AQ9BVJ6 771 aaKnown RBP13.5□□□□□ -0.25
CSDE1-217ENST00000534699 NTSR2O95665 410 aa13.49□□□□□ -0.25
CSDE1-217ENST00000534699 VEGFAP15692 232 aaPredicted RBP13.49□□□□□ -0.25
CSDE1-217ENST00000534699 TCIRG1Q13488 830 aa13.49□□□□□ -0.25
CSDE1-217ENST00000534699 TTLL7Q6ZT98 887 aa13.49□□□□□ -0.25
CSDE1-217ENST00000534699 SNED1Q8TER0 1413 aa13.48□□□□□ -0.25
CSDE1-217ENST00000534699 SMC1BQ8NDV3 1235 aa13.48□□□□□ -0.25
CSDE1-217ENST00000534699 SUPT20HQ8NEM7 779 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms