RNA–Protein interactions for RNA: ENST00000534555.5

RPS3-220, Transcript of ribosomal protein S3, humanhuman

TSL 3

Gene RPS3, Length 387 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3-220ENST00000534555 PRPF40BQ6NWY9 871 aaKnown RBP21.42■■□□□ 1.02
RPS3-220ENST00000534555 PIP4K2AP48426 406 aaPredicted RBP21.41■■□□□ 1.02
RPS3-220ENST00000534555 MASTLQ96GX5 879 aa21.41■■□□□ 1.02
RPS3-220ENST00000534555 FMNL2Q96PY5 1086 aa21.41■■□□□ 1.02
RPS3-220ENST00000534555 SIPA1L3O60292 1781 aaPredicted RBP21.41■■□□□ 1.02
RPS3-220ENST00000534555 ST5P78524 1137 aa21.4■■□□□ 1.02
RPS3-220ENST00000534555 GAS2L2Q8NHY3 880 aa21.4■■□□□ 1.02
RPS3-220ENST00000534555 FOXN1O15353 648 aa21.39■■□□□ 1.01
RPS3-220ENST00000534555 NPM2Q86SE8 214 aaKnown RBP21.39■■□□□ 1.01
RPS3-220ENST00000534555 DZIP3Q86Y13 1208 aaKnown RBP21.39■■□□□ 1.01
RPS3-220ENST00000534555 USP16Q9Y5T5 823 aa21.39■■□□□ 1.01
RPS3-220ENST00000534555 COL3A1P02461 1466 aaPredicted RBP21.38■■□□□ 1.01
RPS3-220ENST00000534555 CNTNAP1P78357 1384 aa21.37■■□□□ 1.01
RPS3-220ENST00000534555 PASKQ96RG2 1323 aa21.37■■□□□ 1.01
RPS3-220ENST00000534555 PRAMEF22A3QJZ6 481 aa21.37■■□□□ 1.01
RPS3-220ENST00000534555 BTBD11A6QL63 1104 aa21.37■■□□□ 1.01
RPS3-220ENST00000534555 C7orf43Q8WVR3 580 aa21.37■■□□□ 1.01
RPS3-220ENST00000534555 TAF1DQ9H5J8 278 aaPredicted RBP21.37■■□□□ 1.01
RPS3-220ENST00000534555 SOGA3Q5TF21 947 aa21.36■■□□□ 1.01
RPS3-220ENST00000534555 OLFM4Q6UX06 510 aa21.36■■□□□ 1.01
RPS3-220ENST00000534555 LDHDQ86WU2 507 aa21.36■■□□□ 1.01
RPS3-220ENST00000534555 ARFGEF2Q9Y6D5 1785 aa21.36■■□□□ 1.01
RPS3-220ENST00000534555 IQCA1LA6NCM1 817 aa21.35■■□□□ 1.01
RPS3-220ENST00000534555 NBPF5PQ86XG9 351 aaPredicted RBP21.35■■□□□ 1.01
RPS3-220ENST00000534555 L3MBTL3Q96JM7 780 aaPredicted RBP21.35■■□□□ 1.01
RPS3-220ENST00000534555 PHACTR3Q96KR7 559 aa21.35■■□□□ 1.01
RPS3-220ENST00000534555 BCORQ6W2J9 1755 aa21.35■■□□□ 1.01
RPS3-220ENST00000534555 ZNF541Q9H0D2 1346 aa21.34■■□□□ 1.01
RPS3-220ENST00000534555 VEGFBP49765 207 aa21.34■■□□□ 1.01
RPS3-220ENST00000534555 CCDC93Q567U6 631 aa21.34■■□□□ 1.01
RPS3-220ENST00000534555 EAPPQ56P03 285 aaPredicted RBP21.34■■□□□ 1.01
RPS3-220ENST00000534555 CEMIPQ8WUJ3 1361 aa21.34■■□□□ 1.01
RPS3-220ENST00000534555 ITGBL1O95965 494 aaPredicted RBP21.33■■□□□ 1.01
RPS3-220ENST00000534555 ZNF277Q9NRM2 450 aaPredicted RBP21.33■■□□□ 1.01
RPS3-220ENST00000534555 SCN4AP35499 1836 aa21.32■■□□□ 1
RPS3-220ENST00000534555 NPR1P16066 1061 aa21.32■■□□□ 1
RPS3-220ENST00000534555 FKBP4Q02790 459 aaKnown RBP eCLIP21.32■■□□□ 1
RPS3-220ENST00000534555 TMEM88BA6NKF7 163 aa21.31■■□□□ 1
RPS3-220ENST00000534555 FAM177BA6PVY3 158 aa21.31■■□□□ 1
RPS3-220ENST00000534555 CLEC11AQ9Y240 323 aa21.31■■□□□ 1
RPS3-220ENST00000534555 PRKAR2BP31323 418 aa21.3■■□□□ 1
RPS3-220ENST00000534555 CLEC4GQ6UXB4 293 aa21.3■■□□□ 1
RPS3-220ENST00000534555 PRDM10Q9NQV6 1147 aa21.3■■□□□ 1
RPS3-220ENST00000534555 KLRG2A4D1S0 409 aaPredicted RBP21.29■■□□□ 1
RPS3-220ENST00000534555 HACL1Q9UJ83 578 aa21.29■■□□□ 1
RPS3-220ENST00000534555 NIP7Q9Y221 180 aaKnown RBP eCLIP21.29■■□□□ 11e-39■■■■■ 33
RPS3-220ENST00000534555 NBPF26B4DH59 902 aa21.28■■□□□ 1
RPS3-220ENST00000534555 EPHX2P34913 555 aa21.28■■□□□ 1
RPS3-220ENST00000534555 CTCFP49711 727 aaPredicted RBP21.28■■□□□ 1
RPS3-220ENST00000534555 NBPF10Q6P3W6 841 aaKnown RBP21.28■■□□□ 1
RPS3-220ENST00000534555 TPTE2Q6XPS3 522 aa21.28■■□□□ 1
RPS3-220ENST00000534555 NBPF15Q8N660 670 aa21.28■■□□□ 1
RPS3-220ENST00000534555 CCER1Q8TC90 406 aaPredicted RBP21.28■■□□□ 1
RPS3-220ENST00000534555 AIDAQ96BJ3 306 aa21.28■■□□□ 1
RPS3-220ENST00000534555 RSPH6AQ9H0K4 717 aa21.28■■□□□ 1
RPS3-220ENST00000534555 ZNF652Q9Y2D9 606 aa21.28■■□□□ 1
RPS3-220ENST00000534555 RNF123Q5XPI4 1314 aa21.28■■□□□ 1
RPS3-220ENST00000534555 SNRPA1P09661 255 aaKnown RBP21.27■■□□□ 1
RPS3-220ENST00000534555 MAP1SQ66K74 1059 aaPredicted RBP21.27■■□□□ 1
RPS3-220ENST00000534555 MCM10Q7L590 875 aa21.27■■□□□ 1
RPS3-220ENST00000534555 SYNE4Q8N205 404 aa21.27■■□□□ 1
RPS3-220ENST00000534555 LBX1P52954 281 aa21.26■□□□□ 0.99
RPS3-220ENST00000534555 HLFQ16534 295 aa21.26■□□□□ 0.99
RPS3-220ENST00000534555 WBP1LQ9NX94 342 aa21.26■□□□□ 0.99
RPS3-220ENST00000534555 ADAMTSL1Q8N6G6 1762 aa21.25■□□□□ 0.99
RPS3-220ENST00000534555 FZD9O00144 591 aa21.25■□□□□ 0.99
RPS3-220ENST00000534555 IARSP41252 1262 aaKnown RBP21.25■□□□□ 0.99
RPS3-220ENST00000534555 DCTN1Q14203 1278 aa21.25■□□□□ 0.99
RPS3-220ENST00000534555 RTKN2Q8IZC4 609 aa21.25■□□□□ 0.99
RPS3-220ENST00000534555 CNTROBQ8N137 903 aa21.25■□□□□ 0.99
RPS3-220ENST00000534555 DEFB115Q30KQ5 88 aa21.24■□□□□ 0.99
RPS3-220ENST00000534555 NPC1L1Q9UHC9 1359 aa21.23■□□□□ 0.99
RPS3-220ENST00000534555 RASSF10A6NK89 507 aa21.22■□□□□ 0.99
RPS3-220ENST00000534555 GTF2E1P29083 439 aaPredicted RBP21.22■□□□□ 0.99
RPS3-220ENST00000534555 ALDH1B1P30837 517 aa21.22■□□□□ 0.99
RPS3-220ENST00000534555 PNMA8AQ86V59 439 aaPredicted RBP21.22■□□□□ 0.99
RPS3-220ENST00000534555 RTF1Q92541 710 aaKnown RBP21.22■□□□□ 0.99
RPS3-220ENST00000534555 HSPA8P11142 646 aaKnown RBP21.2■□□□□ 0.98
RPS3-220ENST00000534555 FMR1Q06787 632 aaKnown RBP eCLIP21.2■□□□□ 0.98
RPS3-220ENST00000534555 NUTM1Q86Y26 1132 aa21.2■□□□□ 0.98
RPS3-220ENST00000534555 GPC2Q8N158 579 aa21.2■□□□□ 0.98
RPS3-220ENST00000534555 NGEFQ8N5V2 710 aa21.2■□□□□ 0.98
RPS3-220ENST00000534555 MIS18AQ9NYP9 233 aa21.2■□□□□ 0.98
RPS3-220ENST00000534555 GJA3Q9Y6H8 435 aa21.2■□□□□ 0.98
RPS3-220ENST00000534555 WDR33Q9C0J8 1336 aaKnown RBP21.2■□□□□ 0.98
RPS3-220ENST00000534555 SLC51AQ86UW1 340 aa21.19■□□□□ 0.98
RPS3-220ENST00000534555 CFAP53Q96M91 514 aa21.19■□□□□ 0.98
RPS3-220ENST00000534555 ABT1Q9ULW3 272 aaKnown RBP21.19■□□□□ 0.98
RPS3-220ENST00000534555 SNED1Q8TER0 1413 aa21.19■□□□□ 0.98
RPS3-220ENST00000534555 COL4A5P29400 1685 aa21.18■□□□□ 0.98
RPS3-220ENST00000534555 RGL2O15211 777 aa21.18■□□□□ 0.98
RPS3-220ENST00000534555 U2AF1L5P0DN76 240 aaPredicted RBP21.18■□□□□ 0.98
RPS3-220ENST00000534555 U2AF1Q01081 240 aaKnown RBP eCLIP21.18■□□□□ 0.98
RPS3-220ENST00000534555 JDP2Q8WYK2 163 aa21.18■□□□□ 0.98
RPS3-220ENST00000534555 PSMD1Q99460 953 aa21.18■□□□□ 0.98
RPS3-220ENST00000534555 ABCC12Q96J65 1359 aa21.18■□□□□ 0.98
RPS3-220ENST00000534555 DDX21Q9NR30 783 aaKnown RBP eCLIP21.17■□□□□ 0.985e-35■□□□□ 8.5
RPS3-220ENST00000534555 NUDCQ9Y266 331 aa21.17■□□□□ 0.98
RPS3-220ENST00000534555 LTBP1Q14766 1721 aa21.17■□□□□ 0.98
RPS3-220ENST00000534555 EIF6P56537 245 aaKnown RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms