RNA–Protein interactions for RNA: ENST00000534112.1

SSH3-211, Transcript of slingshot protein phosphatase 3, humanhuman

TSL 4

Gene SSH3, Length 544 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-211ENST00000534112 PRPF40BQ6NWY9 871 aaKnown RBP28.54■■■□□ 2.16
SSH3-211ENST00000534112 MASTLQ96GX5 879 aa28.54■■■□□ 2.16
SSH3-211ENST00000534112 NUDCQ9Y266 331 aa28.54■■■□□ 2.16
SSH3-211ENST00000534112 PRAMEF22A3QJZ6 481 aa28.53■■■□□ 2.16
SSH3-211ENST00000534112 CLEC4GQ6UXB4 293 aa28.53■■■□□ 2.16
SSH3-211ENST00000534112 SNRPA1P09661 255 aaKnown RBP28.52■■■□□ 2.16
SSH3-211ENST00000534112 RTF1Q92541 710 aaKnown RBP28.52■■■□□ 2.16
SSH3-211ENST00000534112 SOGA3Q5TF21 947 aa28.51■■■□□ 2.15
SSH3-211ENST00000534112 MCM10Q7L590 875 aa28.51■■■□□ 2.15
SSH3-211ENST00000534112 TIAM2Q8IVF5 1701 aa28.51■■■□□ 2.15
SSH3-211ENST00000534112 CCDC88AQ3V6T2 1871 aa28.51■■■□□ 2.15
SSH3-211ENST00000534112 U2AF1L5P0DN76 240 aaPredicted RBP28.5■■■□□ 2.15
SSH3-211ENST00000534112 U2AF1Q01081 240 aaKnown RBP eCLIP28.5■■■□□ 2.15
SSH3-211ENST00000534112 NBPF5PQ86XG9 351 aaPredicted RBP28.5■■■□□ 2.15
SSH3-211ENST00000534112 COL11A2P13942 1736 aaPredicted RBP28.49■■■□□ 2.15
SSH3-211ENST00000534112 DDNO94850 711 aaPredicted RBP28.49■■■□□ 2.15
SSH3-211ENST00000534112 C7orf43Q8WVR3 580 aa28.48■■■□□ 2.15
SSH3-211ENST00000534112 ZNF652Q9Y2D9 606 aa28.48■■■□□ 2.15
SSH3-211ENST00000534112 FER1L6Q2WGJ9 1857 aa28.46■■■□□ 2.15
SSH3-211ENST00000534112 PPP2R1AP30153 589 aa28.46■■■□□ 2.15
SSH3-211ENST00000534112 DCTN1Q14203 1278 aa28.46■■■□□ 2.15
SSH3-211ENST00000534112 CHADLQ6NUI6 762 aa28.46■■■□□ 2.15
SSH3-211ENST00000534112 NBPF26B4DH59 902 aa28.45■■■□□ 2.14
SSH3-211ENST00000534112 NBPF10Q6P3W6 841 aaKnown RBP28.45■■■□□ 2.14
SSH3-211ENST00000534112 NBPF15Q8N660 670 aa28.45■■■□□ 2.14
SSH3-211ENST00000534112 SLX4Q8IY92 1834 aa28.45■■■□□ 2.14
SSH3-211ENST00000534112 KLRG2A4D1S0 409 aaPredicted RBP28.44■■■□□ 2.14
SSH3-211ENST00000534112 HTATSF1O43719 755 aaKnown RBP28.44■■■□□ 2.14
SSH3-211ENST00000534112 HSPA1AP0DMV8 641 aaKnown RBP28.44■■■□□ 2.14
SSH3-211ENST00000534112 HSPA1BP0DMV9 641 aaKnown RBP28.44■■■□□ 2.14
SSH3-211ENST00000534112 NPR1P16066 1061 aa28.44■■■□□ 2.14
SSH3-211ENST00000534112 TPTE2Q6XPS3 522 aa28.44■■■□□ 2.14
SSH3-211ENST00000534112 NIP7Q9Y221 180 aaKnown RBP eCLIP28.44■■■□□ 2.14
SSH3-211ENST00000534112 RGL2O15211 777 aa28.43■■■□□ 2.14
SSH3-211ENST00000534112 POTEIP0CG38 1075 aa28.43■■■□□ 2.14
SSH3-211ENST00000534112 POTEJP0CG39 1038 aa28.43■■■□□ 2.14
SSH3-211ENST00000534112 TNS4Q8IZW8 715 aa28.43■■■□□ 2.14
SSH3-211ENST00000534112 CCDC93Q567U6 631 aa28.42■■■□□ 2.14
SSH3-211ENST00000534112 TAF7Q15545 349 aaPredicted RBP28.41■■■□□ 2.14
SSH3-211ENST00000534112 CREBZFQ9NS37 354 aa28.41■■■□□ 2.14
SSH3-211ENST00000534112 DICER1Q9UPY3 1922 aaKnown RBP28.41■■■□□ 2.14
SSH3-211ENST00000534112 BCORQ6W2J9 1755 aa28.4■■■□□ 2.14
SSH3-211ENST00000534112 IQCA1LA6NCM1 817 aa28.39■■■□□ 2.14
SSH3-211ENST00000534112 FAM177BA6PVY3 158 aa28.38■■■□□ 2.13
SSH3-211ENST00000534112 FKBP4Q02790 459 aaKnown RBP eCLIP28.38■■■□□ 2.13
SSH3-211ENST00000534112 HLFQ16534 295 aa28.38■■■□□ 2.13
SSH3-211ENST00000534112 L3MBTL3Q96JM7 780 aaPredicted RBP28.38■■■□□ 2.13
SSH3-211ENST00000534112 ZNF277Q9NRM2 450 aaPredicted RBP28.38■■■□□ 2.13
SSH3-211ENST00000534112 MIS18AQ9NYP9 233 aa28.38■■■□□ 2.13
SSH3-211ENST00000534112 CAPN15O75808 1086 aa28.37■■■□□ 2.13
SSH3-211ENST00000534112 OLFM4Q6UX06 510 aa28.37■■■□□ 2.13
SSH3-211ENST00000534112 RTKN2Q8IZC4 609 aa28.36■■■□□ 2.13
SSH3-211ENST00000534112 TAF1DQ9H5J8 278 aaPredicted RBP28.36■■■□□ 2.13
SSH3-211ENST00000534112 MKRN1Q9UHC7 482 aaKnown RBP28.36■■■□□ 2.13
SSH3-211ENST00000534112 LDHDQ86WU2 507 aa28.35■■■□□ 2.13
SSH3-211ENST00000534112 GTF2E1P29083 439 aaPredicted RBP28.34■■■□□ 2.13
SSH3-211ENST00000534112 ALDH1B1P30837 517 aa28.33■■■□□ 2.13
SSH3-211ENST00000534112 PASKQ96RG2 1323 aa28.32■■■□□ 2.12
SSH3-211ENST00000534112 ZNF541Q9H0D2 1346 aa28.32■■■□□ 2.12
SSH3-211ENST00000534112 ARFGEF2Q9Y6D5 1785 aa28.32■■■□□ 2.12
SSH3-211ENST00000534112 NGEFQ8N5V2 710 aa28.31■■■□□ 2.12
SSH3-211ENST00000534112 SYNE4Q8N205 404 aa28.3■■■□□ 2.12
SSH3-211ENST00000534112 CACNA1SQ13698 1873 aa28.29■■■□□ 2.12
SSH3-211ENST00000534112 ERVV-1B6SEH8 477 aa28.29■■■□□ 2.12
SSH3-211ENST00000534112 EAPPQ56P03 285 aaPredicted RBP28.29■■■□□ 2.12
SSH3-211ENST00000534112 PNISRQ8TF01 805 aaKnown RBP28.29■■■□□ 2.12
SSH3-211ENST00000534112 HACL1Q9UJ83 578 aa28.29■■■□□ 2.12
SSH3-211ENST00000534112 ITGBL1O95965 494 aaPredicted RBP28.28■■■□□ 2.12
SSH3-211ENST00000534112 IARSP41252 1262 aaKnown RBP28.28■■■□□ 2.12
SSH3-211ENST00000534112 CRY2Q49AN0 593 aa28.28■■■□□ 2.12
SSH3-211ENST00000534112 NYXQ9GZU5 481 aa28.28■■■□□ 2.12
SSH3-211ENST00000534112 FZD9O00144 591 aa28.27■■■□□ 2.12
SSH3-211ENST00000534112 NEFMP07197 916 aa28.27■■■□□ 2.12
SSH3-211ENST00000534112 NUTM1Q86Y26 1132 aa28.27■■■□□ 2.12
SSH3-211ENST00000534112 CNTNAP1P78357 1384 aa28.26■■■□□ 2.12
SSH3-211ENST00000534112 EPHX2P34913 555 aa28.26■■■□□ 2.11
SSH3-211ENST00000534112 RRP7AQ9Y3A4 280 aaKnown RBP28.26■■■□□ 2.11
SSH3-211ENST00000534112 MAP3K15Q6ZN16 1313 aa28.25■■■□□ 2.11
SSH3-211ENST00000534112 EIF4A1P60842 406 aaKnown RBP28.25■■■□□ 2.11
SSH3-211ENST00000534112 TTLL7Q6ZT98 887 aa28.25■■■□□ 2.11
SSH3-211ENST00000534112 PSMD1Q99460 953 aa28.25■■■□□ 2.11
SSH3-211ENST00000534112 CLEC11AQ9Y240 323 aa28.25■■■□□ 2.11
SSH3-211ENST00000534112 ABCC12Q96J65 1359 aa28.24■■■□□ 2.11
SSH3-211ENST00000534112 TMEM88BA6NKF7 163 aa28.24■■■□□ 2.11
SSH3-211ENST00000534112 PLEKHF1Q96S99 279 aa28.24■■■□□ 2.11
SSH3-211ENST00000534112 RNF123Q5XPI4 1314 aa28.23■■■□□ 2.11
SSH3-211ENST00000534112 SCN4AP35499 1836 aa28.23■■■□□ 2.11
SSH3-211ENST00000534112 KIF6Q6ZMV9 814 aa28.23■■■□□ 2.11
SSH3-211ENST00000534112 PNMA8AQ86V59 439 aaPredicted RBP28.23■■■□□ 2.11
SSH3-211ENST00000534112 MYL6BP14649 208 aa28.22■■■□□ 2.11
SSH3-211ENST00000534112 CC2D2BQ6DHV5 1058 aa28.22■■■□□ 2.11
SSH3-211ENST00000534112 GPC2Q8N158 579 aa28.22■■■□□ 2.11
SSH3-211ENST00000534112 JDP2Q8WYK2 163 aa28.22■■■□□ 2.11
SSH3-211ENST00000534112 THUMPD2Q9BTF0 503 aaKnown RBP28.22■■■□□ 2.11
SSH3-211ENST00000534112 SNED1Q8TER0 1413 aa28.21■■■□□ 2.11
SSH3-211ENST00000534112 GPTP24298 496 aa28.21■■■□□ 2.11
SSH3-211ENST00000534112 HOXA10P31260 410 aaPredicted RBP28.21■■■□□ 2.11
SSH3-211ENST00000534112 NFE2L2Q16236 605 aa28.21■■■□□ 2.11
SSH3-211ENST00000534112 VEGFBP49765 207 aa28.2■■■□□ 2.1
SSH3-211ENST00000534112 RPGRQ92834 1020 aaKnown RBP28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms