RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ANXA1P04083 346 aa18.64■□□□□ 0.57
CPSF1-206ENST00000531480 CT47B1P0C2W7 299 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-206ENST00000531480 TTLL7Q6ZT98 887 aa18.64■□□□□ 0.57
CPSF1-206ENST00000531480 NPM2Q86SE8 214 aaKnown RBP18.64■□□□□ 0.57
CPSF1-206ENST00000531480 ZNF428Q96B54 188 aa18.64■□□□□ 0.57
CPSF1-206ENST00000531480 MAP3K15Q6ZN16 1313 aa18.64■□□□□ 0.57
CPSF1-206ENST00000531480 ANKRD36CQ5JPF3 1778 aa18.63■□□□□ 0.57
CPSF1-206ENST00000531480 KIF13BQ9NQT8 1826 aa18.63■□□□□ 0.57
CPSF1-206ENST00000531480 MSL1Q68DK7 614 aa18.63■□□□□ 0.57
CPSF1-206ENST00000531480 ZNF330Q9Y3S2 320 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-206ENST00000531480 AFDNP55196 1824 aaKnown RBP18.63■□□□□ 0.57
CPSF1-206ENST00000531480 COPS6Q7L5N1 327 aa18.62■□□□□ 0.57
CPSF1-206ENST00000531480 XAGE3Q8WTP9 111 aa18.62■□□□□ 0.57
CPSF1-206ENST00000531480 ATP10DQ9P241 1426 aa18.62■□□□□ 0.57
CPSF1-206ENST00000531480 ARFGEF2Q9Y6D5 1785 aa18.62■□□□□ 0.57
CPSF1-206ENST00000531480 POLD1P28340 1107 aa18.61■□□□□ 0.57
CPSF1-206ENST00000531480 MMP10P09238 476 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 DDR1Q08345 913 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 NFIXQ14938 502 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 HLFQ16534 295 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 GIGYF2Q6Y7W6 1299 aaKnown RBP18.6■□□□□ 0.57
CPSF1-206ENST00000531480 KIF6Q6ZMV9 814 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 STK31Q9BXU1 1019 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 PHAXQ9H814 394 aaKnown RBP18.6■□□□□ 0.57
CPSF1-206ENST00000531480 ZNF652Q9Y2D9 606 aa18.6■□□□□ 0.57
CPSF1-206ENST00000531480 POLRMTO00411 1230 aaKnown RBP18.59■□□□□ 0.57
CPSF1-206ENST00000531480 TBC1D9BQ66K14 1250 aa18.59■□□□□ 0.57
CPSF1-206ENST00000531480 KLHL34Q8N239 644 aa18.59■□□□□ 0.57
CPSF1-206ENST00000531480 PLBD2Q8NHP8 589 aa18.59■□□□□ 0.57
CPSF1-206ENST00000531480 ARXQ96QS3 562 aa18.59■□□□□ 0.57
CPSF1-206ENST00000531480 FHDC1Q9C0D6 1143 aaPredicted RBP18.59■□□□□ 0.57
CPSF1-206ENST00000531480 SLC4A2P04920 1241 aa18.58■□□□□ 0.56
CPSF1-206ENST00000531480 CARMIL3Q8ND23 1372 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 ALDH1L2Q3SY69 923 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 ANKRD13DQ6ZTN6 518 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 ZNF34Q8IZ26 560 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 ZBTB3Q9H5J0 574 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 C10orf71Q711Q0 1435 aa18.57■□□□□ 0.56
CPSF1-206ENST00000531480 BRPF1P55201 1214 aaPredicted RBP18.56■□□□□ 0.56
CPSF1-206ENST00000531480 AIMP1Q12904 312 aaKnown RBP18.56■□□□□ 0.56
CPSF1-206ENST00000531480 G2E3Q7L622 706 aa18.56■□□□□ 0.56
CPSF1-206ENST00000531480 KIAA1551Q9HCM1 1747 aa18.56■□□□□ 0.56
CPSF1-206ENST00000531480 IBTKQ9P2D0 1353 aaPredicted RBP18.55■□□□□ 0.56
CPSF1-206ENST00000531480 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
CPSF1-206ENST00000531480 FLIIQ13045 1269 aa18.55■□□□□ 0.56
CPSF1-206ENST00000531480 PARP3Q9Y6F1 533 aa18.55■□□□□ 0.56
CPSF1-206ENST00000531480 ADCY9O60503 1353 aa18.55■□□□□ 0.56
CPSF1-206ENST00000531480 YY1P25490 414 aa18.54■□□□□ 0.56
CPSF1-206ENST00000531480 MRPL50Q8N5N7 158 aaKnown RBP18.54■□□□□ 0.56
CPSF1-206ENST00000531480 SSH1Q8WYL5 1049 aa18.54■□□□□ 0.56
CPSF1-206ENST00000531480 SETDB2Q96T68 719 aa18.54■□□□□ 0.56
CPSF1-206ENST00000531480 SYT17Q9BSW7 474 aa18.54■□□□□ 0.56
CPSF1-206ENST00000531480 UBN2Q6ZU65 1347 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 TRIM28Q13263 835 aaKnown RBP18.53■□□□□ 0.56
CPSF1-206ENST00000531480 TCIRG1Q13488 830 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 HSP90AB3PQ58FF7 597 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 KSR2Q6VAB6 950 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 ANKRD31Q8N7Z5 1873 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 CD2APQ9Y5K6 639 aa18.53■□□□□ 0.56
CPSF1-206ENST00000531480 DDX58O95786 925 aaKnown RBP18.52■□□□□ 0.56
CPSF1-206ENST00000531480 SERPINB2P05120 415 aa18.52■□□□□ 0.56
CPSF1-206ENST00000531480 RARSP54136 660 aaKnown RBP18.52■□□□□ 0.56
CPSF1-206ENST00000531480 ISCA1Q9BUE6 129 aa18.52■□□□□ 0.56
CPSF1-206ENST00000531480 NIP7Q9Y221 180 aaKnown RBP eCLIP18.52■□□□□ 0.56
CPSF1-206ENST00000531480 PARP10Q53GL7 1025 aa18.51■□□□□ 0.55
CPSF1-206ENST00000531480 BICDL1Q6ZP65 573 aa18.51■□□□□ 0.55
CPSF1-206ENST00000531480 RIC1Q4ADV7 1423 aa18.5■□□□□ 0.55
CPSF1-206ENST00000531480 PI4KAP2A4QPH2 592 aa18.5■□□□□ 0.55
CPSF1-206ENST00000531480 PI4KAP1Q8N8J0 262 aa18.5■□□□□ 0.55
CPSF1-206ENST00000531480 METTL22Q9BUU2 404 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-206ENST00000531480 BRCA1P38398 1863 aaKnown RBP18.5■□□□□ 0.55
CPSF1-206ENST00000531480 PRR5LQ6MZQ0 368 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 RIC3Q7Z5B4 369 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 NLRP10Q86W26 655 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 N4BP2Q86UW6 1770 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-206ENST00000531480 DLEC1Q9Y238 1755 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 PTPRCP08575 1304 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 RNF123Q5XPI4 1314 aa18.49■□□□□ 0.55
CPSF1-206ENST00000531480 NTSR2O95665 410 aa18.48■□□□□ 0.55
CPSF1-206ENST00000531480 FKBP5Q13451 457 aaPredicted RBP18.48■□□□□ 0.55
CPSF1-206ENST00000531480 SUSD4Q5VX71 490 aa18.48■□□□□ 0.55
CPSF1-206ENST00000531480 MAP3K2Q9Y2U5 619 aa18.48■□□□□ 0.55
CPSF1-206ENST00000531480 GPTP24298 496 aa18.47■□□□□ 0.55
CPSF1-206ENST00000531480 TPTE2Q6XPS3 522 aa18.47■□□□□ 0.55
CPSF1-206ENST00000531480 NBPF5PQ86XG9 351 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-206ENST00000531480 CNBD1Q8NA66 436 aa18.47■□□□□ 0.55
CPSF1-206ENST00000531480 NYXQ9GZU5 481 aa18.47■□□□□ 0.55
CPSF1-206ENST00000531480 PXDNLA1KZ92 1463 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 LAMB2P55268 1798 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 KLRG2A4D1S0 409 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-206ENST00000531480 IGKV5-2P06315 115 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 TGFB2P61812 414 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 PPP1R42Q7Z4L9 355 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 PELP1Q8IZL8 1130 aaKnown RBP18.46■□□□□ 0.55
CPSF1-206ENST00000531480 DNAAF4Q8WXU2 420 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 BRIP1Q9BX63 1249 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 SMC4Q9NTJ3 1288 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 CHD4Q14839 1912 aa18.46■□□□□ 0.55
CPSF1-206ENST00000531480 CCDC191Q8NCU4 936 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms