RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ITPK1Q13572 414 aa26.33■■□□□ 1.81
VPS28-208ENST00000527797 IGKV5-2P06315 115 aa26.32■■□□□ 1.8
VPS28-208ENST00000527797 BCL11BQ9C0K0 894 aaPredicted RBP26.32■■□□□ 1.8
VPS28-208ENST00000527797 CCDC87Q9NVE4 849 aa26.32■■□□□ 1.8
VPS28-208ENST00000527797 C9orf78Q9NZ63 289 aaPredicted RBP26.32■■□□□ 1.8
VPS28-208ENST00000527797 IBTKQ9P2D0 1353 aaPredicted RBP26.32■■□□□ 1.8
VPS28-208ENST00000527797 IL6STP40189 918 aaPredicted RBP26.32■■□□□ 1.8
VPS28-208ENST00000527797 KIF6Q6ZMV9 814 aa26.32■■□□□ 1.8
VPS28-208ENST00000527797 NPM2Q86SE8 214 aaKnown RBP26.32■■□□□ 1.8
VPS28-208ENST00000527797 HDAC5Q9UQL6 1122 aa26.32■■□□□ 1.8
VPS28-208ENST00000527797 NEURL1BA8MQ27 555 aa26.31■■□□□ 1.8
VPS28-208ENST00000527797 CRKLP46109 303 aaKnown RBP26.31■■□□□ 1.8
VPS28-208ENST00000527797 SMC5Q8IY18 1101 aa26.31■■□□□ 1.8
VPS28-208ENST00000527797 ZBTB3Q9H5J0 574 aa26.31■■□□□ 1.8
VPS28-208ENST00000527797 LRRFIP2Q9Y608 721 aaKnown RBP26.31■■□□□ 1.8
VPS28-208ENST00000527797 NBPF7P0C2Y1 421 aaPredicted RBP26.3■■□□□ 1.8
VPS28-208ENST00000527797 INTS5Q6P9B9 1019 aaKnown RBP26.3■■□□□ 1.8
VPS28-208ENST00000527797 CICQ96RK0 1608 aaPredicted RBP26.3■■□□□ 1.8
VPS28-208ENST00000527797 HMMRO75330 724 aa26.29■■□□□ 1.8
VPS28-208ENST00000527797 GCC1Q96CN9 775 aa26.29■■□□□ 1.8
VPS28-208ENST00000527797 GCKRQ14397 625 aa26.28■■□□□ 1.8
VPS28-208ENST00000527797 GRM8O00222 908 aa26.28■■□□□ 1.8
VPS28-208ENST00000527797 ARXQ96QS3 562 aa26.28■■□□□ 1.8
VPS28-208ENST00000527797 RGS17Q9UGC6 210 aaPredicted RBP26.28■■□□□ 1.8
VPS28-208ENST00000527797 UTYO14607 1347 aa26.27■■□□□ 1.8
VPS28-208ENST00000527797 ZNF831Q5JPB2 1677 aa26.27■■□□□ 1.8
VPS28-208ENST00000527797 ATP8B2P98198 1209 aa26.27■■□□□ 1.8
VPS28-208ENST00000527797 PDZRN3Q9UPQ7 1066 aa26.27■■□□□ 1.8
VPS28-208ENST00000527797 BTAF1O14981 1849 aa26.27■■□□□ 1.8
VPS28-208ENST00000527797 ATP5J2-PTCD1G3V325 749 aa26.26■■□□□ 1.79
VPS28-208ENST00000527797 EIF5P55010 431 aaKnown RBP26.26■■□□□ 1.79
VPS28-208ENST00000527797 MAP3K15Q6ZN16 1313 aa26.26■■□□□ 1.79
VPS28-208ENST00000527797 SKAP1Q86WV1 359 aa26.25■■□□□ 1.79
VPS28-208ENST00000527797 ARFGEF2Q9Y6D5 1785 aa26.25■■□□□ 1.79
VPS28-208ENST00000527797 BRWD3Q6RI45 1802 aa26.25■■□□□ 1.79
VPS28-208ENST00000527797 LINC00116Q8NCU8 138 aa26.25■■□□□ 1.79
VPS28-208ENST00000527797 DCTPP1Q9H773 170 aa26.25■■□□□ 1.79
VPS28-208ENST00000527797 CCNL1Q9UK58 526 aaPredicted RBP26.25■■□□□ 1.79
VPS28-208ENST00000527797 SBF2Q86WG5 1849 aa26.24■■□□□ 1.79
VPS28-208ENST00000527797 TCIRG1Q13488 830 aa26.24■■□□□ 1.79
VPS28-208ENST00000527797 DZIP3Q86Y13 1208 aaKnown RBP26.24■■□□□ 1.79
VPS28-208ENST00000527797 TRIM37O94972 964 aa26.22■■□□□ 1.79
VPS28-208ENST00000527797 KCNQ4P56696 695 aa26.22■■□□□ 1.79
VPS28-208ENST00000527797 POTEAQ6S8J7 498 aa26.22■■□□□ 1.79
VPS28-208ENST00000527797 GIGYF2Q6Y7W6 1299 aaKnown RBP26.22■■□□□ 1.79
VPS28-208ENST00000527797 CNTNAP4Q9C0A0 1308 aa26.22■■□□□ 1.79
VPS28-208ENST00000527797 ERVV-1B6SEH8 477 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 CCDC191Q8NCU4 936 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 CWC25Q9NXE8 425 aaPredicted RBP26.21■■□□□ 1.79
VPS28-208ENST00000527797 NUP188Q5SRE5 1749 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 RGS3P49796 1198 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 NUCB1Q02818 461 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 HSP90AB3PQ58FF7 597 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 ISCA1Q9BUE6 129 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 TBC1D2BQ9UPU7 963 aa26.21■■□□□ 1.79
VPS28-208ENST00000527797 RREB1Q92766 1687 aa26.2■■□□□ 1.78
VPS28-208ENST00000527797 A0A087WZG4 1122 aa26.2■■□□□ 1.78
VPS28-208ENST00000527797 PNMA6EA0A0J9YXQ4 647 aa26.2■■□□□ 1.78
VPS28-208ENST00000527797 RC3H1Q5TC82 1133 aaKnown RBP26.2■■□□□ 1.78
VPS28-208ENST00000527797 TRIM28Q13263 835 aaKnown RBP26.19■■□□□ 1.78
VPS28-208ENST00000527797 SUCLG2Q96I99 432 aa26.19■■□□□ 1.78
VPS28-208ENST00000527797 ANKRD45Q5TZF3 282 aa26.18■■□□□ 1.78
VPS28-208ENST00000527797 PPP1R42Q7Z4L9 355 aa26.18■■□□□ 1.78
VPS28-208ENST00000527797 HLFQ16534 295 aa26.17■■□□□ 1.78
VPS28-208ENST00000527797 SSH3Q8TE77 659 aa26.17■■□□□ 1.78
VPS28-208ENST00000527797 COL5A3P25940 1745 aaPredicted RBP26.17■■□□□ 1.78
VPS28-208ENST00000527797 H7C1W4 665 aa26.17■■□□□ 1.78
VPS28-208ENST00000527797 MTX1Q13505 466 aa26.17■■□□□ 1.78
VPS28-208ENST00000527797 CHD1LQ86WJ1 897 aa26.17■■□□□ 1.78
VPS28-208ENST00000527797 SRGAP3O43295 1099 aa26.16■■□□□ 1.78
VPS28-208ENST00000527797 POLA2Q14181 598 aa26.16■■□□□ 1.78
VPS28-208ENST00000527797 UBE3BQ7Z3V4 1068 aa26.16■■□□□ 1.78
VPS28-208ENST00000527797 COL15A1P39059 1388 aa26.16■■□□□ 1.78
VPS28-208ENST00000527797 ZBTB47Q9UFB7 747 aaPredicted RBP26.15■■□□□ 1.78
VPS28-208ENST00000527797 LY75O60449 1722 aa26.14■■□□□ 1.78
VPS28-208ENST00000527797 KAZALD1Q96I82 304 aa26.14■■□□□ 1.78
VPS28-208ENST00000527797 RPS6KA4O75676 772 aa26.14■■□□□ 1.77
VPS28-208ENST00000527797 CASP7P55210 303 aa26.14■■□□□ 1.77
VPS28-208ENST00000527797 JARID2Q92833 1246 aaPredicted RBP26.14■■□□□ 1.77
VPS28-208ENST00000527797 BICC1Q9H694 974 aaKnown RBP26.14■■□□□ 1.77
VPS28-208ENST00000527797 SLC27A3Q5K4L6 730 aa26.13■■□□□ 1.77
VPS28-208ENST00000527797 LNPKQ9C0E8 428 aa26.13■■□□□ 1.77
VPS28-208ENST00000527797 AFDNP55196 1824 aaKnown RBP26.13■■□□□ 1.77
VPS28-208ENST00000527797 CAMTA2O94983 1202 aa26.12■■□□□ 1.77
VPS28-208ENST00000527797 MYH14Q7Z406 1995 aaKnown RBP26.12■■□□□ 1.77
VPS28-208ENST00000527797 GNPATO15228 680 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 HMGB2P26583 209 aaKnown RBP26.1■■□□□ 1.77
VPS28-208ENST00000527797 EXOC6BQ9Y2D4 811 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 PCCAP05165 728 aaPredicted RBP26.1■■□□□ 1.77
VPS28-208ENST00000527797 GPTP24298 496 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 PDE4AP27815 886 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 NLRP10Q86W26 655 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 ZNF34Q8IZ26 560 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 LRRC4BQ9NT99 713 aa26.1■■□□□ 1.77
VPS28-208ENST00000527797 RTCBQ9Y3I0 505 aaKnown RBP26.1■■□□□ 1.77
VPS28-208ENST00000527797 EPHA10Q5JZY3 1008 aa26.09■■□□□ 1.77
VPS28-208ENST00000527797 ZNF652Q9Y2D9 606 aa26.09■■□□□ 1.77
VPS28-208ENST00000527797 APBB1O00213 710 aa26.08■■□□□ 1.77
VPS28-208ENST00000527797 SURF6O75683 361 aaKnown RBP26.08■■□□□ 1.77
VPS28-208ENST00000527797 ZBTB38Q8NAP3 1195 aaPredicted RBP26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms