RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ANKRD24Q8TF21 1146 aa9.25□□□□□ -0.93
HDAC3-216ENST00000523088 NLRP2Q9NX02 1062 aa9.25□□□□□ -0.93
HDAC3-216ENST00000523088 CGNL1Q0VF96 1302 aa9.25□□□□□ -0.93
HDAC3-216ENST00000523088 ANKRD26Q9UPS8 1709 aa9.25□□□□□ -0.93
HDAC3-216ENST00000523088 PPFIA4O75335 1185 aa9.24□□□□□ -0.93
HDAC3-216ENST00000523088 AMPHP49418 695 aa9.24□□□□□ -0.93
HDAC3-216ENST00000523088 PIAS4Q8N2W9 510 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-216ENST00000523088 MYCBPQ99417 103 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-216ENST00000523088 ZHX1Q9UKY1 873 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-216ENST00000523088 SYNRGQ9UMZ2 1314 aa9.24□□□□□ -0.93
HDAC3-216ENST00000523088 ANKRD62A6NC57 917 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 KIF3CO14782 793 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 COQ9O75208 318 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 CCDC172P0C7W6 258 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 R3HDM1Q15032 1099 aaKnown RBP9.23□□□□□ -0.93
HDAC3-216ENST00000523088 CTR9Q6PD62 1173 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 BTAF1O14981 1849 aa9.23□□□□□ -0.93
HDAC3-216ENST00000523088 PSDA5PKW4 1024 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 RIOK3O14730 519 aaKnown RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 EPB41L2O43491 1005 aaKnown RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 ZSCAN20P17040 1043 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 HOXC9P31274 260 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 CD151P48509 253 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 ZKSCAN2Q63HK3 967 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 MIER1Q8N108 512 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 MPNDQ8N594 471 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 MARCH10Q8NA82 808 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 MNS1Q8NEH6 495 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 FBXW7Q969H0 707 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 CCDC94Q9BW85 323 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-216ENST00000523088 SMC3Q9UQE7 1217 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 MAP3K19Q56UN5 1328 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 FLT4P35916 1363 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 PLEKHG2Q9H7P9 1386 aa9.22□□□□□ -0.93
HDAC3-216ENST00000523088 COPB2P35606 906 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 EIF4G2P78344 907 aaKnown RBP eCLIP9.21□□□□□ -0.94
HDAC3-216ENST00000523088 L1TD1Q5T7N2 865 aaKnown RBP9.21□□□□□ -0.94
HDAC3-216ENST00000523088 HDGFL1Q5TGJ6 251 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 CLEC4GQ6UXB4 293 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 SMC5Q8IY18 1101 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 ZCRB1Q8TBF4 217 aaKnown RBP9.21□□□□□ -0.94
HDAC3-216ENST00000523088 RRAGDQ9NQL2 400 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-216ENST00000523088 IGSF5Q9NSI5 407 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 QSER1Q2KHR3 1735 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 RGPD2P0DJD1 1756 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 MAP2P11137 1827 aaKnown RBP9.21□□□□□ -0.94
HDAC3-216ENST00000523088 INSRP06213 1382 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 NSD3Q9BZ95 1437 aa9.21□□□□□ -0.94
HDAC3-216ENST00000523088 SHANK3Q9BYB0 1731 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 CASZ1Q86V15 1759 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 FYB1O15117 783 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 RHBDL3P58872 404 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 PUS10Q3MIT2 529 aaKnown RBP9.2□□□□□ -0.94
HDAC3-216ENST00000523088 HSP90B2PQ58FF3 399 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 ZFYVE27Q5T4F4 411 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 MAMSTRQ6ZN01 415 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 BORCS6Q96GS4 357 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 SUDS3Q9H7L9 328 aaPredicted RBP9.2□□□□□ -0.94
HDAC3-216ENST00000523088 NSD2O96028 1365 aa9.2□□□□□ -0.94
HDAC3-216ENST00000523088 DOT1LQ8TEK3 1739 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 CTAGE5O15320 804 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 GJC2Q5T442 439 aaPredicted RBP9.19□□□□□ -0.94
HDAC3-216ENST00000523088 DNAJC14Q6Y2X3 702 aaPredicted RBP9.19□□□□□ -0.94
HDAC3-216ENST00000523088 MICAL1Q8TDZ2 1067 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 RAPGEF4Q8WZA2 1011 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 NCAPGQ9BPX3 1015 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 LARP6Q9BRS8 491 aaKnown RBP9.19□□□□□ -0.94
HDAC3-216ENST00000523088 SPON1Q9HCB6 807 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 STK32BQ9NY57 414 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 ZBTB12Q9Y330 459 aaPredicted RBP9.19□□□□□ -0.94
HDAC3-216ENST00000523088 KIF16BQ96L93 1317 aa9.19□□□□□ -0.94
HDAC3-216ENST00000523088 IPO8O15397 1037 aaKnown RBP9.18□□□□□ -0.94
HDAC3-216ENST00000523088 LY75O60449 1722 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 FAM200BP0CF97 657 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 ZNF853P0CG23 659 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 PAPPAQ13219 1627 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 SLC27A3Q5K4L6 730 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 GET4Q7L5D6 327 aaPredicted RBP9.18□□□□□ -0.94
HDAC3-216ENST00000523088 PKD1L3Q7Z443 1732 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 RPAINQ86UA6 219 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 CCDC97Q96F63 343 aaPredicted RBP9.18□□□□□ -0.94
HDAC3-216ENST00000523088 GGNBP2Q9H3C7 697 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 METTL14Q9HCE5 456 aaKnown RBP9.18□□□□□ -0.94
HDAC3-216ENST00000523088 ARHGEF10LQ9HCE6 1279 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 KNSTRNQ9Y448 316 aa9.18□□□□□ -0.94
HDAC3-216ENST00000523088 PCDH11XQ9BZA7 1347 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 PCDH11YQ9BZA8 1340 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 KLHL33A6NCF5 533 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 DCAF8L1A6NGE4 600 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 EIF3JO75822 258 aaKnown RBP9.17□□□□□ -0.94
HDAC3-216ENST00000523088 TXNRD1Q16881 649 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 LTV1Q96GA3 475 aaPredicted RBP9.17□□□□□ -0.94
HDAC3-216ENST00000523088 BRMS1Q9HCU9 246 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 FAM13BQ9NYF5 915 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 DONSONQ9NYP3 566 aa9.17□□□□□ -0.94
HDAC3-216ENST00000523088 KCNQ2O43526 872 aa9.16□□□□□ -0.94
HDAC3-216ENST00000523088 TATP17735 454 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-216ENST00000523088 PSMC1P62191 440 aaKnown RBP9.16□□□□□ -0.94
HDAC3-216ENST00000523088 IRX5P78411 483 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-216ENST00000523088 RRS1Q15050 365 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms