RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MAP3K15Q6ZN16 1313 aa18.37■□□□□ 0.53
NUP54-216ENST00000514901 VAMP4O75379 141 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 ANXA1P04083 346 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 NFIXQ14938 502 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 COPS6Q7L5N1 327 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 SETDB2Q96T68 719 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 STK31Q9BXU1 1019 aa18.36■□□□□ 0.53
NUP54-216ENST00000514901 TTLL7Q6ZT98 887 aa18.35■□□□□ 0.53
NUP54-216ENST00000514901 TRMT2AQ8IZ69 625 aaKnown RBP18.35■□□□□ 0.53
NUP54-216ENST00000514901 XAGE3Q8WTP9 111 aa18.35■□□□□ 0.53
NUP54-216ENST00000514901 CD2APQ9Y5K6 639 aa18.35■□□□□ 0.53
NUP54-216ENST00000514901 POLRMTO00411 1230 aaKnown RBP18.34■□□□□ 0.53
NUP54-216ENST00000514901 TBC1D9BQ66K14 1250 aa18.34■□□□□ 0.53
NUP54-216ENST00000514901 FHDC1Q9C0D6 1143 aaPredicted RBP18.34■□□□□ 0.53
NUP54-216ENST00000514901 DDR1Q08345 913 aa18.33■□□□□ 0.52
NUP54-216ENST00000514901 AIMP1Q12904 312 aaKnown RBP18.33■□□□□ 0.52
NUP54-216ENST00000514901 HLFQ16534 295 aa18.33■□□□□ 0.52
NUP54-216ENST00000514901 BICDL1Q6ZP65 573 aa18.33■□□□□ 0.52
NUP54-216ENST00000514901 CDCA7LQ96GN5 454 aa18.33■□□□□ 0.52
NUP54-216ENST00000514901 SYT17Q9BSW7 474 aa18.33■□□□□ 0.52
NUP54-216ENST00000514901 SERPINB2P05120 415 aa18.32■□□□□ 0.52
NUP54-216ENST00000514901 HSP90AB3PQ58FF7 597 aa18.32■□□□□ 0.52
NUP54-216ENST00000514901 GIGYF2Q6Y7W6 1299 aaKnown RBP18.32■□□□□ 0.52
NUP54-216ENST00000514901 ANKRD13DQ6ZTN6 518 aa18.32■□□□□ 0.52
NUP54-216ENST00000514901 ZNF428Q96B54 188 aa18.32■□□□□ 0.52
NUP54-216ENST00000514901 ZBTB3Q9H5J0 574 aa18.32■□□□□ 0.52
NUP54-216ENST00000514901 SCN7AQ01118 1682 aa18.31■□□□□ 0.52
NUP54-216ENST00000514901 DDX58O95786 925 aaKnown RBP18.31■□□□□ 0.52
NUP54-216ENST00000514901 PLBD2Q8NHP8 589 aa18.31■□□□□ 0.52
NUP54-216ENST00000514901 NIP7Q9Y221 180 aaKnown RBP eCLIP18.31■□□□□ 0.52
NUP54-216ENST00000514901 CARMIL3Q8ND23 1372 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 ZBED9Q6R2W3 1325 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 CACNA1FO60840 1977 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 SLC4A2P04920 1241 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 CT47B1P0C2W7 299 aaPredicted RBP18.3■□□□□ 0.52
NUP54-216ENST00000514901 KLHL34Q8N239 644 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 BCORQ6W2J9 1755 aa18.3■□□□□ 0.52
NUP54-216ENST00000514901 TGFB2P61812 414 aa18.28■□□□□ 0.52
NUP54-216ENST00000514901 TCIRG1Q13488 830 aa18.28■□□□□ 0.52
NUP54-216ENST00000514901 TPTE2Q6XPS3 522 aa18.28■□□□□ 0.52
NUP54-216ENST00000514901 ZNF34Q8IZ26 560 aa18.28■□□□□ 0.52
NUP54-216ENST00000514901 PHAXQ9H814 394 aaKnown RBP18.28■□□□□ 0.52
NUP54-216ENST00000514901 ATP10DQ9P241 1426 aa18.28■□□□□ 0.52
NUP54-216ENST00000514901 TCERG1O14776 1098 aaKnown RBP18.27■□□□□ 0.52
NUP54-216ENST00000514901 NPHP1O15259 732 aa18.27■□□□□ 0.52
NUP54-216ENST00000514901 PARP10Q53GL7 1025 aa18.27■□□□□ 0.52
NUP54-216ENST00000514901 RIC3Q7Z5B4 369 aa18.27■□□□□ 0.52
NUP54-216ENST00000514901 NBPF5PQ86XG9 351 aaPredicted RBP18.27■□□□□ 0.52
NUP54-216ENST00000514901 NYXQ9GZU5 481 aa18.27■□□□□ 0.52
NUP54-216ENST00000514901 NUP98P52948 1817 aa18.27■□□□□ 0.52
NUP54-216ENST00000514901 CNBD1Q8NA66 436 aa18.26■□□□□ 0.51
NUP54-216ENST00000514901 C10orf71Q711Q0 1435 aa18.25■□□□□ 0.51
NUP54-216ENST00000514901 ST5P78524 1137 aa18.25■□□□□ 0.51
NUP54-216ENST00000514901 KSR2Q6VAB6 950 aa18.25■□□□□ 0.51
NUP54-216ENST00000514901 PPP1R42Q7Z4L9 355 aa18.25■□□□□ 0.51
NUP54-216ENST00000514901 PDZRN3Q9UPQ7 1066 aa18.25■□□□□ 0.51
NUP54-216ENST00000514901 DCAF8L1A6NGE4 600 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 GPTP24298 496 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 GTF2E1P29083 439 aaPredicted RBP18.24■□□□□ 0.51
NUP54-216ENST00000514901 FLIIQ13045 1269 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 TRIM28Q13263 835 aaKnown RBP18.24■□□□□ 0.51
NUP54-216ENST00000514901 ALDH1L2Q3SY69 923 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 PRR5LQ6MZQ0 368 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 BRIP1Q9BX63 1249 aa18.24■□□□□ 0.51
NUP54-216ENST00000514901 IBTKQ9P2D0 1353 aaPredicted RBP18.23■□□□□ 0.51
NUP54-216ENST00000514901 PDE6BP35913 854 aa18.23■□□□□ 0.51
NUP54-216ENST00000514901 NLGN2Q8NFZ4 835 aa18.23■□□□□ 0.51
NUP54-216ENST00000514901 AFDNP55196 1824 aaKnown RBP18.23■□□□□ 0.51
NUP54-216ENST00000514901 NRXN2Q9P2S2 1712 aa18.23■□□□□ 0.51
NUP54-216ENST00000514901 PI4KAP2A4QPH2 592 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 FKBP5Q13451 457 aaPredicted RBP18.22■□□□□ 0.51
NUP54-216ENST00000514901 SUSD4Q5VX71 490 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 G2E3Q7L622 706 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 PI4KAP1Q8N8J0 262 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 ISCA1Q9BUE6 129 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 METTL22Q9BUU2 404 aaPredicted RBP18.22■□□□□ 0.51
NUP54-216ENST00000514901 UTP14AQ9BVJ6 771 aaKnown RBP18.22■□□□□ 0.51
NUP54-216ENST00000514901 RNF123Q5XPI4 1314 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 UBN2Q6ZU65 1347 aa18.22■□□□□ 0.51
NUP54-216ENST00000514901 KIF13BQ9NQT8 1826 aa18.21■□□□□ 0.51
NUP54-216ENST00000514901 NLRP10Q86W26 655 aa18.21■□□□□ 0.51
NUP54-216ENST00000514901 MAP3K2Q9Y2U5 619 aa18.21■□□□□ 0.51
NUP54-216ENST00000514901 FAM177BA6PVY3 158 aa18.2■□□□□ 0.5
NUP54-216ENST00000514901 NEXNQ0ZGT2 675 aa18.2■□□□□ 0.5
NUP54-216ENST00000514901 MRPL50Q8N5N7 158 aaKnown RBP18.2■□□□□ 0.5
NUP54-216ENST00000514901 SSH1Q8WYL5 1049 aa18.2■□□□□ 0.5
NUP54-216ENST00000514901 A0A0G2JLW4 131 aa18.19■□□□□ 0.5
NUP54-216ENST00000514901 H0YIN7 160 aa18.19■□□□□ 0.5
NUP54-216ENST00000514901 DPEP1P16444 411 aa18.19■□□□□ 0.5
NUP54-216ENST00000514901 CCDC191Q8NCU4 936 aa18.19■□□□□ 0.5
NUP54-216ENST00000514901 MYD88Q99836 296 aa18.19■□□□□ 0.5
NUP54-216ENST00000514901 ATP5J2-PTCD1G3V325 749 aa18.18■□□□□ 0.5
NUP54-216ENST00000514901 NTSR2O95665 410 aa18.18■□□□□ 0.5
NUP54-216ENST00000514901 BRPF1P55201 1214 aaPredicted RBP18.18■□□□□ 0.5
NUP54-216ENST00000514901 C2CD5Q86YS7 1000 aa18.18■□□□□ 0.5
NUP54-216ENST00000514901 DNAAF4Q8WXU2 420 aa18.18■□□□□ 0.5
NUP54-216ENST00000514901 TRMT112Q9UI30 125 aaKnown RBP18.18■□□□□ 0.5
NUP54-216ENST00000514901 ADCY9O60503 1353 aa18.17■□□□□ 0.5
NUP54-216ENST00000514901 KLRG2A4D1S0 409 aaPredicted RBP18.17■□□□□ 0.5
NUP54-216ENST00000514901 SLC10A5Q5PT55 438 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms