RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 OLFM4Q6UX06 510 aa15.38■□□□□ 0.05
TCOF1-213ENST00000514442 TSPYL6Q8N831 410 aa15.38■□□□□ 0.05
TCOF1-213ENST00000514442 COL17A1Q9UMD9 1497 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 RDXP35241 583 aaKnown RBP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 RBM5P52756 815 aaKnown RBP eCLIP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 ERCC4Q92889 916 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 MAP3K11Q16584 847 aa15.38■□□□□ 0.05
TCOF1-213ENST00000514442 UBXN4Q92575 508 aa15.38■□□□□ 0.05
TCOF1-213ENST00000514442 SF3B2Q13435 895 aaKnown RBP15.37■□□□□ 0.05
TCOF1-213ENST00000514442 GTF2A1P52655 376 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-213ENST00000514442 PIBF1Q8WXW3 757 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 LARP6Q9BRS8 491 aaKnown RBP15.37■□□□□ 0.05
TCOF1-213ENST00000514442 ZPR1O75312 459 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 U2AF2P26368 475 aaKnown RBP eCLIP15.37■□□□□ 0.05
TCOF1-213ENST00000514442 FILIP1Q7Z7B0 1213 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 CCDC83Q8IWF9 413 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 CTNNA3Q9UI47 895 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 ME1P48163 572 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 TXLNBQ8N3L3 684 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 ZNF652Q9Y2D9 606 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 ERBB4Q15303 1308 aa15.37■□□□□ 0.05
TCOF1-213ENST00000514442 TRIM22Q8IYM9 498 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 AKAP2Q9Y2D5 859 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 INSRP06213 1382 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 SMC2O95347 1197 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 MRPL50Q8N5N7 158 aaKnown RBP15.36■□□□□ 0.05
TCOF1-213ENST00000514442 POLR3GO15318 223 aaPredicted RBP15.36■□□□□ 0.05
TCOF1-213ENST00000514442 USP8P40818 1118 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 KRT85P78386 507 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 NUCB1Q02818 461 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 CCDC70Q6NSX1 233 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 FERMT3Q86UX7 667 aa15.36■□□□□ 0.05
TCOF1-213ENST00000514442 H0YHG0 523 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 IPO7O95373 1038 aaKnown RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 CEP135Q66GS9 1140 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 PDILTQ8N807 584 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 IPO4Q8TEX9 1081 aaKnown RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 SNRPA1P09661 255 aaKnown RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 KRT32Q14532 448 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 IMMTQ16891 758 aaKnown RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 UBAC1Q9BSL1 405 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 NPHP3Q7Z494 1330 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 EIF3JO75822 258 aaKnown RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 HCLS1P14317 486 aaPredicted RBP15.35■□□□□ 0.05
TCOF1-213ENST00000514442 EYA1Q99502 592 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 FLT4P35916 1363 aa15.35■□□□□ 0.05
TCOF1-213ENST00000514442 RLBP1P12271 317 aa15.34■□□□□ 0.05
TCOF1-213ENST00000514442 ZNF397Q8NF99 534 aaPredicted RBP15.34■□□□□ 0.05
TCOF1-213ENST00000514442 ZSCAN31Q96LW9 406 aaPredicted RBP15.34■□□□□ 0.05
TCOF1-213ENST00000514442 SNRKQ9NRH2 765 aa15.34■□□□□ 0.05
TCOF1-213ENST00000514442 PIK3C2GO75747 1445 aa15.34■□□□□ 0.05
TCOF1-213ENST00000514442 CFAP65Q6ZU64 1925 aaKnown RBP15.34■□□□□ 0.05
TCOF1-213ENST00000514442 XAGE3Q8WTP9 111 aa15.33■□□□□ 0.05
TCOF1-213ENST00000514442 CLIP2Q9UDT6 1046 aa15.33■□□□□ 0.05
TCOF1-213ENST00000514442 BLMP54132 1417 aaPredicted RBP15.33■□□□□ 0.05
TCOF1-213ENST00000514442 NEMFO60524 1076 aa15.33■□□□□ 0.04
TCOF1-213ENST00000514442 SMTNL1A8MU46 457 aa15.33■□□□□ 0.04
TCOF1-213ENST00000514442 ZCRB1Q8TBF4 217 aaKnown RBP15.33■□□□□ 0.04
TCOF1-213ENST00000514442 CWC25Q9NXE8 425 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-213ENST00000514442 ATP10AO60312 1499 aa15.33■□□□□ 0.04
TCOF1-213ENST00000514442 MAP3K19Q56UN5 1328 aa15.33■□□□□ 0.04
TCOF1-213ENST00000514442 ANKRD13DQ6ZTN6 518 aa15.33■□□□□ 0.04
TCOF1-213ENST00000514442 ANKRD18BA2A2Z9 1011 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 GPATCH11Q8N954 259 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 SPATA32Q96LK8 384 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 PUS7Q96PZ0 661 aaKnown RBP15.32■□□□□ 0.04
TCOF1-213ENST00000514442 GDPD2Q9HCC8 539 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 MINDY4BA8MYZ0 360 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 COPS6Q7L5N1 327 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 ACSBG1Q96GR2 724 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 ECHDC1Q9NTX5 307 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 ZSCAN29Q8IWY8 852 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-213ENST00000514442 HSP90AB3PQ58FF7 597 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 AKAP4Q5JQC9 854 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 ARHGAP45Q92619 1136 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 BCL2L12Q9HB09 334 aa15.32■□□□□ 0.04
TCOF1-213ENST00000514442 GOLIM4O00461 696 aa15.31■□□□□ 0.04
TCOF1-213ENST00000514442 RIOK3O14730 519 aaKnown RBP15.31■□□□□ 0.04
TCOF1-213ENST00000514442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.31■□□□□ 0.04
TCOF1-213ENST00000514442 ERLIN1O75477 346 aa15.31■□□□□ 0.04
TCOF1-213ENST00000514442 TTC22Q5TAA0 569 aa15.31■□□□□ 0.04
TCOF1-213ENST00000514442 GCP02774 474 aa15.31■□□□□ 0.04
TCOF1-213ENST00000514442 ANKIB1Q9P2G1 1089 aa15.31■□□□□ 0.04
TCOF1-213ENST00000514442 HOXC9P31274 260 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 CAVIN4Q5BKX8 364 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 DMRT2Q9Y5R5 561 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 U3KPZ7 1027 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-213ENST00000514442 CCDC171Q6TFL3 1326 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 VAMP4O75379 141 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 CAMK4Q16566 473 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 C19orf44Q9H6X5 657 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 LDHAL6AQ6ZMR3 332 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 PAXIP1Q6ZW49 1069 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-213ENST00000514442 CDK5RAP3Q96JB5 506 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 UBE2HP62256 183 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 CTR9Q6PD62 1173 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 NFATC2IPQ8NCF5 419 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 BRPF1P55201 1214 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-213ENST00000514442 RHPN1Q8TCX5 695 aa15.3■□□□□ 0.04
TCOF1-213ENST00000514442 C16orf71Q8IYS4 520 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms