RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CC2D1BQ5T0F9 858 aaKnown RBP27.46■■□□□ 1.99
SQSTM1-215ENST00000514093 TAF1DQ9H5J8 278 aaPredicted RBP27.46■■□□□ 1.99
SQSTM1-215ENST00000514093 PASKQ96RG2 1323 aa27.45■■□□□ 1.99
SQSTM1-215ENST00000514093 CLSPNQ9HAW4 1339 aa27.45■■□□□ 1.99
SQSTM1-215ENST00000514093 KCNQ3O43525 872 aa27.45■■□□□ 1.98
SQSTM1-215ENST00000514093 LDHDQ86WU2 507 aa27.45■■□□□ 1.98
SQSTM1-215ENST00000514093 IQCA1LA6NCM1 817 aa27.44■■□□□ 1.98
SQSTM1-215ENST00000514093 U2SURPO15042 1029 aaKnown RBP27.44■■□□□ 1.98
SQSTM1-215ENST00000514093 SOGA3Q5TF21 947 aa27.44■■□□□ 1.98
SQSTM1-215ENST00000514093 DZIP3Q86Y13 1208 aaKnown RBP27.44■■□□□ 1.98
SQSTM1-215ENST00000514093 FMNL2Q96PY5 1086 aa27.44■■□□□ 1.98
SQSTM1-215ENST00000514093 VEGFBP49765 207 aa27.43■■□□□ 1.98
SQSTM1-215ENST00000514093 CNGB1Q14028 1251 aaPredicted RBP27.43■■□□□ 1.98
SQSTM1-215ENST00000514093 EAPPQ56P03 285 aaPredicted RBP27.43■■□□□ 1.98
SQSTM1-215ENST00000514093 C7orf43Q8WVR3 580 aa27.42■■□□□ 1.98
SQSTM1-215ENST00000514093 L3MBTL3Q96JM7 780 aaPredicted RBP27.42■■□□□ 1.98
SQSTM1-215ENST00000514093 ITGBL1O95965 494 aaPredicted RBP27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 OLFM4Q6UX06 510 aa27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 GAS2L2Q8NHY3 880 aa27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 PRDM10Q9NQV6 1147 aa27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 ZNF277Q9NRM2 450 aaPredicted RBP27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 CLEC11AQ9Y240 323 aa27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 ZNF541Q9H0D2 1346 aa27.41■■□□□ 1.98
SQSTM1-215ENST00000514093 TMEM88BA6NKF7 163 aa27.4■■□□□ 1.98
SQSTM1-215ENST00000514093 NBPF5PQ86XG9 351 aaPredicted RBP27.4■■□□□ 1.98
SQSTM1-215ENST00000514093 AIDAQ96BJ3 306 aa27.4■■□□□ 1.98
SQSTM1-215ENST00000514093 USP16Q9Y5T5 823 aa27.4■■□□□ 1.98
SQSTM1-215ENST00000514093 CCDC93Q567U6 631 aa27.39■■□□□ 1.98
SQSTM1-215ENST00000514093 KIF7Q2M1P5 1343 aa27.39■■□□□ 1.97
SQSTM1-215ENST00000514093 SIPA1L3O60292 1781 aaPredicted RBP27.38■■□□□ 1.97
SQSTM1-215ENST00000514093 PRAMEF22A3QJZ6 481 aa27.38■■□□□ 1.97
SQSTM1-215ENST00000514093 BTBD11A6QL63 1104 aa27.38■■□□□ 1.97
SQSTM1-215ENST00000514093 PER1O15534 1290 aaPredicted RBP27.38■■□□□ 1.97
SQSTM1-215ENST00000514093 CTCFP49711 727 aaPredicted RBP27.38■■□□□ 1.97
SQSTM1-215ENST00000514093 FKBP4Q02790 459 aaKnown RBP eCLIP27.37■■□□□ 1.971e-6■■□□□ 13.4
SQSTM1-215ENST00000514093 ARFGEF2Q9Y6D5 1785 aa27.37■■□□□ 1.97
SQSTM1-215ENST00000514093 SCN4AP35499 1836 aa27.37■■□□□ 1.97
SQSTM1-215ENST00000514093 NPR1P16066 1061 aa27.36■■□□□ 1.97
SQSTM1-215ENST00000514093 LBX1P52954 281 aa27.36■■□□□ 1.97
SQSTM1-215ENST00000514093 HACL1Q9UJ83 578 aa27.36■■□□□ 1.97
SQSTM1-215ENST00000514093 BCORQ6W2J9 1755 aa27.35■■□□□ 1.97
SQSTM1-215ENST00000514093 FAM177BA6PVY3 158 aa27.35■■□□□ 1.97
SQSTM1-215ENST00000514093 PHACTR3Q96KR7 559 aa27.35■■□□□ 1.97
SQSTM1-215ENST00000514093 WBP1LQ9NX94 342 aa27.35■■□□□ 1.97
SQSTM1-215ENST00000514093 COL3A1P02461 1466 aaPredicted RBP27.35■■□□□ 1.97
SQSTM1-215ENST00000514093 EPHX2P34913 555 aa27.34■■□□□ 1.97
SQSTM1-215ENST00000514093 CEMIPQ8WUJ3 1361 aa27.34■■□□□ 1.97
SQSTM1-215ENST00000514093 MAP1SQ66K74 1059 aaPredicted RBP27.33■■□□□ 1.97
SQSTM1-215ENST00000514093 CLEC4GQ6UXB4 293 aa27.33■■□□□ 1.97
SQSTM1-215ENST00000514093 RNF123Q5XPI4 1314 aa27.33■■□□□ 1.97
SQSTM1-215ENST00000514093 DEFB115Q30KQ5 88 aa27.31■■□□□ 1.96
SQSTM1-215ENST00000514093 CNTROBQ8N137 903 aa27.31■■□□□ 1.96
SQSTM1-215ENST00000514093 NIP7Q9Y221 180 aaKnown RBP eCLIP27.31■■□□□ 1.96
SQSTM1-215ENST00000514093 ZNF652Q9Y2D9 606 aa27.31■■□□□ 1.96
SQSTM1-215ENST00000514093 KLRG2A4D1S0 409 aaPredicted RBP27.3■■□□□ 1.96
SQSTM1-215ENST00000514093 TPTE2Q6XPS3 522 aa27.3■■□□□ 1.96
SQSTM1-215ENST00000514093 SYNE4Q8N205 404 aa27.3■■□□□ 1.96
SQSTM1-215ENST00000514093 PRKAR2BP31323 418 aa27.29■■□□□ 1.96
SQSTM1-215ENST00000514093 IARSP41252 1262 aaKnown RBP27.29■■□□□ 1.96
SQSTM1-215ENST00000514093 RTKN2Q8IZC4 609 aa27.29■■□□□ 1.96
SQSTM1-215ENST00000514093 RASSF10A6NK89 507 aa27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 NBPF26B4DH59 902 aa27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 FZD9O00144 591 aa27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 SNRPA1P09661 255 aaKnown RBP27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 NBPF10Q6P3W6 841 aaKnown RBP27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 PNMA8AQ86V59 439 aaPredicted RBP27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 NBPF15Q8N660 670 aa27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 ADAMTSL1Q8N6G6 1762 aa27.27■■□□□ 1.96
SQSTM1-215ENST00000514093 HSPA8P11142 646 aaKnown RBP27.26■■□□□ 1.95
SQSTM1-215ENST00000514093 MCM10Q7L590 875 aa27.26■■□□□ 1.95
SQSTM1-215ENST00000514093 ABT1Q9ULW3 272 aaKnown RBP27.26■■□□□ 1.95
SQSTM1-215ENST00000514093 WDR33Q9C0J8 1336 aaKnown RBP27.25■■□□□ 1.95
SQSTM1-215ENST00000514093 HLFQ16534 295 aa27.25■■□□□ 1.95
SQSTM1-215ENST00000514093 ALDH1B1P30837 517 aa27.24■■□□□ 1.95
SQSTM1-215ENST00000514093 GPC2Q8N158 579 aa27.24■■□□□ 1.95
SQSTM1-215ENST00000514093 RSPH6AQ9H0K4 717 aa27.24■■□□□ 1.95
SQSTM1-215ENST00000514093 GJA3Q9Y6H8 435 aa27.24■■□□□ 1.95
SQSTM1-215ENST00000514093 GTF2E1P29083 439 aaPredicted RBP27.23■■□□□ 1.95
SQSTM1-215ENST00000514093 FMR1Q06787 632 aaKnown RBP eCLIP27.23■■□□□ 1.952e-7■□□□□ 9.8
SQSTM1-215ENST00000514093 ABHD8Q96I13 439 aa27.23■■□□□ 1.95
SQSTM1-215ENST00000514093 DCTN1Q14203 1278 aa27.22■■□□□ 1.95
SQSTM1-215ENST00000514093 JDP2Q8WYK2 163 aa27.21■■□□□ 1.95
SQSTM1-215ENST00000514093 DDX21Q9NR30 783 aaKnown RBP eCLIP27.21■■□□□ 1.95
SQSTM1-215ENST00000514093 MAP2K1Q02750 393 aaPredicted RBP27.2■■□□□ 1.94
SQSTM1-215ENST00000514093 RTF1Q92541 710 aaKnown RBP27.2■■□□□ 1.94
SQSTM1-215ENST00000514093 NUTM1Q86Y26 1132 aa27.19■■□□□ 1.94
SQSTM1-215ENST00000514093 NGEFQ8N5V2 710 aa27.19■■□□□ 1.94
SQSTM1-215ENST00000514093 CCER1Q8TC90 406 aaPredicted RBP27.19■■□□□ 1.94
SQSTM1-215ENST00000514093 EIF6P56537 245 aaKnown RBP27.18■■□□□ 1.94
SQSTM1-215ENST00000514093 GRM1Q13255 1194 aa27.18■■□□□ 1.94
SQSTM1-215ENST00000514093 FAM161AQ3B820 660 aa27.18■■□□□ 1.94
SQSTM1-215ENST00000514093 PAXIP1Q6ZW49 1069 aaPredicted RBP27.18■■□□□ 1.94
SQSTM1-215ENST00000514093 PSMD1Q99460 953 aa27.18■■□□□ 1.94
SQSTM1-215ENST00000514093 COL4A5P29400 1685 aa27.17■■□□□ 1.94
SQSTM1-215ENST00000514093 SLC51AQ86UW1 340 aa27.17■■□□□ 1.94
SQSTM1-215ENST00000514093 ABCC12Q96J65 1359 aa27.17■■□□□ 1.94
SQSTM1-215ENST00000514093 SNED1Q8TER0 1413 aa27.16■■□□□ 1.94
SQSTM1-215ENST00000514093 EPS15P42566 896 aa27.16■■□□□ 1.94
SQSTM1-215ENST00000514093 MIS18AQ9NYP9 233 aa27.16■■□□□ 1.94
SQSTM1-215ENST00000514093 NPC1L1Q9UHC9 1359 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms