RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RASSF10A6NK89 507 aa22.44■■□□□ 1.18
VIM-208ENST00000497849 EAPPQ56P03 285 aaPredicted RBP22.44■■□□□ 1.18
VIM-208ENST00000497849 TTC5Q8N0Z6 440 aa22.44■■□□□ 1.18
VIM-208ENST00000497849 ZNF541Q9H0D2 1346 aa22.44■■□□□ 1.18
VIM-208ENST00000497849 ZNF330Q9Y3S2 320 aaPredicted RBP22.44■■□□□ 1.18
VIM-208ENST00000497849 HEG1Q9ULI3 1381 aa22.43■■□□□ 1.18
VIM-208ENST00000497849 IL6STP40189 918 aaPredicted RBP22.43■■□□□ 1.18
VIM-208ENST00000497849 SETDB2Q96T68 719 aa22.43■■□□□ 1.18
VIM-208ENST00000497849 BCORQ6W2J9 1755 aa22.43■■□□□ 1.18
VIM-208ENST00000497849 CAMTA2O94983 1202 aa22.42■■□□□ 1.18
VIM-208ENST00000497849 DEFB115Q30KQ5 88 aa22.42■■□□□ 1.18
VIM-208ENST00000497849 SIPA1L3O60292 1781 aaPredicted RBP22.41■■□□□ 1.18
VIM-208ENST00000497849 ST5P78524 1137 aa22.41■■□□□ 1.18
VIM-208ENST00000497849 HACL1Q9UJ83 578 aa22.41■■□□□ 1.18
VIM-208ENST00000497849 CLEC11AQ9Y240 323 aa22.41■■□□□ 1.18
VIM-208ENST00000497849 EPHX2P34913 555 aa22.4■■□□□ 1.18
VIM-208ENST00000497849 CCDC93Q567U6 631 aa22.4■■□□□ 1.18
VIM-208ENST00000497849 ZNF790Q6PG37 636 aa22.4■■□□□ 1.18
VIM-208ENST00000497849 TEX13AQ9BXU3 409 aaPredicted RBP22.4■■□□□ 1.18
VIM-208ENST00000497849 WDR33Q9C0J8 1336 aaKnown RBP22.39■■□□□ 1.18
VIM-208ENST00000497849 NPHP1O15259 732 aa22.39■■□□□ 1.17
VIM-208ENST00000497849 A1BGP04217 495 aa22.39■■□□□ 1.17
VIM-208ENST00000497849 MAP1SQ66K74 1059 aaPredicted RBP22.39■■□□□ 1.17
VIM-208ENST00000497849 CNTROBQ8N137 903 aa22.39■■□□□ 1.17
VIM-208ENST00000497849 ZNF277Q9NRM2 450 aaPredicted RBP22.39■■□□□ 1.17
VIM-208ENST00000497849 FKBP4Q02790 459 aaKnown RBP eCLIP22.38■■□□□ 1.17
VIM-208ENST00000497849 OLFM4Q6UX06 510 aa22.38■■□□□ 1.17
VIM-208ENST00000497849 RNF123Q5XPI4 1314 aa22.37■■□□□ 1.17
VIM-208ENST00000497849 MAP2K1Q02750 393 aaPredicted RBP22.37■■□□□ 1.17
VIM-208ENST00000497849 IL17REQ8NFR9 667 aa22.37■■□□□ 1.17
VIM-208ENST00000497849 TIMELESSQ9UNS1 1208 aa22.37■■□□□ 1.17
VIM-208ENST00000497849 THSD7BQ9C0I4 1608 aa22.37■■□□□ 1.17
VIM-208ENST00000497849 PNMA8AQ86V59 439 aaPredicted RBP22.36■■□□□ 1.17
VIM-208ENST00000497849 KNSTRNQ9Y448 316 aa22.36■■□□□ 1.17
VIM-208ENST00000497849 KLRG2A4D1S0 409 aaPredicted RBP22.35■■□□□ 1.17
VIM-208ENST00000497849 FZD9O00144 591 aa22.35■■□□□ 1.17
VIM-208ENST00000497849 HSPA5P11021 654 aaKnown RBP22.35■■□□□ 1.17
VIM-208ENST00000497849 AMER1Q5JTC6 1135 aaPredicted RBP22.35■■□□□ 1.17
VIM-208ENST00000497849 NPR1P16066 1061 aa22.34■■□□□ 1.17
VIM-208ENST00000497849 RGS19P49795 217 aa22.34■■□□□ 1.17
VIM-208ENST00000497849 DZIP3Q86Y13 1208 aaKnown RBP22.34■■□□□ 1.17
VIM-208ENST00000497849 ABT1Q9ULW3 272 aaKnown RBP22.34■■□□□ 1.17
VIM-208ENST00000497849 MLLT1Q03111 559 aaPredicted RBP22.33■■□□□ 1.17
VIM-208ENST00000497849 TEFQ10587 303 aa22.33■■□□□ 1.17
VIM-208ENST00000497849 NBPF5PQ86XG9 351 aaPredicted RBP22.33■■□□□ 1.17
VIM-208ENST00000497849 FMNL2Q96PY5 1086 aa22.33■■□□□ 1.17
VIM-208ENST00000497849 LTBP1Q14766 1721 aa22.32■■□□□ 1.16
VIM-208ENST00000497849 EIF4G2P78344 907 aaKnown RBP eCLIP22.32■■□□□ 1.16
VIM-208ENST00000497849 NPM2Q86SE8 214 aaKnown RBP22.32■■□□□ 1.16
VIM-208ENST00000497849 DDX21Q9NR30 783 aaKnown RBP eCLIP22.32■■□□□ 1.16
VIM-208ENST00000497849 CCDC85CA6NKD9 419 aa22.31■■□□□ 1.16
VIM-208ENST00000497849 KCNQ3O43525 872 aa22.31■■□□□ 1.16
VIM-208ENST00000497849 DIAPH1O60610 1272 aaKnown RBP22.31■■□□□ 1.16
VIM-208ENST00000497849 IARSP41252 1262 aaKnown RBP22.31■■□□□ 1.16
VIM-208ENST00000497849 PIP4K2AP48426 406 aaPredicted RBP22.31■■□□□ 1.16
VIM-208ENST00000497849 RTKN2Q8IZC4 609 aa22.31■■□□□ 1.16
VIM-208ENST00000497849 GPC2Q8N158 579 aa22.31■■□□□ 1.16
VIM-208ENST00000497849 SNED1Q8TER0 1413 aa22.31■■□□□ 1.16
VIM-208ENST00000497849 GNAT3A8MTJ3 354 aa22.3■■□□□ 1.16
VIM-208ENST00000497849 FMR1Q06787 632 aaKnown RBP eCLIP22.3■■□□□ 1.16
VIM-208ENST00000497849 CLEC4GQ6UXB4 293 aa22.3■■□□□ 1.16
VIM-208ENST00000497849 SYNE4Q8N205 404 aa22.3■■□□□ 1.16
VIM-208ENST00000497849 CAPNS2Q96L46 248 aa22.29■■□□□ 1.16
VIM-208ENST00000497849 USP16Q9Y5T5 823 aa22.29■■□□□ 1.16
VIM-208ENST00000497849 COL4A5P29400 1685 aa22.29■■□□□ 1.16
VIM-208ENST00000497849 CEMIPQ8WUJ3 1361 aa22.27■■□□□ 1.16
VIM-208ENST00000497849 CYP4F22Q6NT55 531 aa22.27■■□□□ 1.16
VIM-208ENST00000497849 TRPM7Q96QT4 1865 aa22.27■■□□□ 1.16
VIM-208ENST00000497849 PCDH10Q9P2E7 1040 aa22.27■■□□□ 1.16
VIM-208ENST00000497849 PRAMEF22A3QJZ6 481 aa22.26■■□□□ 1.15
VIM-208ENST00000497849 TPTE2Q6XPS3 522 aa22.26■■□□□ 1.15
VIM-208ENST00000497849 GAS2L2Q8NHY3 880 aa22.26■■□□□ 1.15
VIM-208ENST00000497849 GPR101Q96P66 508 aaPredicted RBP22.26■■□□□ 1.15
VIM-208ENST00000497849 ZNF652Q9Y2D9 606 aa22.25■■□□□ 1.15
VIM-208ENST00000497849 COL3A1P02461 1466 aaPredicted RBP22.25■■□□□ 1.15
VIM-208ENST00000497849 ALDH1B1P30837 517 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 ECE1P42892 770 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 CST9Q5W186 159 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 PAXIP1Q6ZW49 1069 aaPredicted RBP22.24■■□□□ 1.15
VIM-208ENST00000497849 PSMD1Q99460 953 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 BEGAINQ9BUH8 593 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 TSKSQ9UJT2 592 aa22.24■■□□□ 1.15
VIM-208ENST00000497849 NIP7Q9Y221 180 aaKnown RBP eCLIP22.24■■□□□ 1.15
VIM-208ENST00000497849 FAM177BA6PVY3 158 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 BTBD11A6QL63 1104 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 EPS15P42566 896 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 SCNN1DP51172 638 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 GRM1Q13255 1194 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 JDP2Q8WYK2 163 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 GJA3Q9Y6H8 435 aa22.23■■□□□ 1.15
VIM-208ENST00000497849 TNRC18O15417 2968 aaPredicted RBP22.21■■□□□ 1.15
VIM-208ENST00000497849 NBPF26B4DH59 902 aa22.21■■□□□ 1.15
VIM-208ENST00000497849 TRAF5O00463 557 aa22.21■■□□□ 1.15
VIM-208ENST00000497849 EIF6P56537 245 aaKnown RBP22.21■■□□□ 1.15
VIM-208ENST00000497849 NBPF10Q6P3W6 841 aaKnown RBP22.21■■□□□ 1.15
VIM-208ENST00000497849 NBPF15Q8N660 670 aa22.21■■□□□ 1.15
VIM-208ENST00000497849 TLL2Q9Y6L7 1015 aa22.21■■□□□ 1.15
VIM-208ENST00000497849 CASP8AP2Q9UKL3 1982 aa22.21■■□□□ 1.15
VIM-208ENST00000497849 RGL2O15211 777 aa22.2■■□□□ 1.14
VIM-208ENST00000497849 AOC2O75106 756 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms