RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 HYPKQ9NX55 129 aa12.84□□□□□ -0.35
HDAC3-214ENST00000495485 RTCBQ9Y3I0 505 aaKnown RBP12.84□□□□□ -0.35
HDAC3-214ENST00000495485 PXDNLA1KZ92 1463 aa12.84□□□□□ -0.35
HDAC3-214ENST00000495485 HMMRO75330 724 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 RPS6KA4O75676 772 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 CYP19A1P11511 503 aaPredicted RBP12.83□□□□□ -0.36
HDAC3-214ENST00000495485 EIF2S2P20042 333 aaKnown RBP12.83□□□□□ -0.36
HDAC3-214ENST00000495485 ITPK1Q13572 414 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 SLC4A10Q6U841 1118 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 LINC00116Q8NCU8 138 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 SLC4A9Q96Q91 983 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 ANO8Q9HCE9 1232 aaPredicted RBP12.83□□□□□ -0.36
HDAC3-214ENST00000495485 CCDC87Q9NVE4 849 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 CASZ1Q86V15 1759 aa12.83□□□□□ -0.36
HDAC3-214ENST00000495485 A0A087WZG4 1122 aa12.82□□□□□ -0.36
HDAC3-214ENST00000495485 GIGYF1O75420 1035 aaPredicted RBP12.82□□□□□ -0.36
HDAC3-214ENST00000495485 CRKLP46109 303 aaKnown RBP12.82□□□□□ -0.36
HDAC3-214ENST00000495485 R3HDM1Q15032 1099 aaKnown RBP12.82□□□□□ -0.36
HDAC3-214ENST00000495485 COL24A1Q17RW2 1714 aa12.82□□□□□ -0.36
HDAC3-214ENST00000495485 IL6STP40189 918 aaPredicted RBP12.81□□□□□ -0.36
HDAC3-214ENST00000495485 RGS3P49796 1198 aa12.81□□□□□ -0.36
HDAC3-214ENST00000495485 ZNF827Q17R98 1081 aa12.81□□□□□ -0.36
HDAC3-214ENST00000495485 TRAPPC3LQ5T215 181 aa12.81□□□□□ -0.36
HDAC3-214ENST00000495485 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
HDAC3-214ENST00000495485 SMC5Q8IY18 1101 aa12.81□□□□□ -0.36
HDAC3-214ENST00000495485 GNPATO15228 680 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 PDE4AP27815 886 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 NECTIN2Q92692 538 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 MTFR1LQ9H019 292 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 PNPLA7Q6ZV29 1317 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 LRP5O75197 1615 aa12.8□□□□□ -0.36
HDAC3-214ENST00000495485 EIF5BO60841 1220 aaKnown RBP12.79□□□□□ -0.36
HDAC3-214ENST00000495485 GNAI2P04899 355 aa12.79□□□□□ -0.36
HDAC3-214ENST00000495485 SRCIN1Q9C0H9 1055 aa12.79□□□□□ -0.36
HDAC3-214ENST00000495485 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDAC3-214ENST00000495485 PDZRN3Q9UPQ7 1066 aa12.79□□□□□ -0.36
HDAC3-214ENST00000495485 N4BP2Q86UW6 1770 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-214ENST00000495485 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.78□□□□□ -0.36
HDAC3-214ENST00000495485 RFC4P35249 363 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
HDAC3-214ENST00000495485 INTS5Q6P9B9 1019 aaKnown RBP12.78□□□□□ -0.36
HDAC3-214ENST00000495485 G2E3Q7L622 706 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 ANKRD44Q8N8A2 993 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 BACH2Q9BYV9 841 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 SPON1Q9HCB6 807 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
HDAC3-214ENST00000495485 C4AP0C0L4 1744 aa12.77□□□□□ -0.36
HDAC3-214ENST00000495485 KCNQ3O43525 872 aa12.77□□□□□ -0.37
HDAC3-214ENST00000495485 ANP32AP39687 249 aaKnown RBP12.77□□□□□ -0.37
HDAC3-214ENST00000495485 KCNQ4P56696 695 aa12.77□□□□□ -0.37
HDAC3-214ENST00000495485 NLGN1Q8N2Q7 840 aa12.77□□□□□ -0.37
HDAC3-214ENST00000495485 DNAAF4Q8WXU2 420 aa12.77□□□□□ -0.37
HDAC3-214ENST00000495485 COL15A1P39059 1388 aa12.77□□□□□ -0.37
HDAC3-214ENST00000495485 PSDA5PKW4 1024 aaPredicted RBP12.76□□□□□ -0.37
HDAC3-214ENST00000495485 ZPR1O75312 459 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 POLD1P28340 1107 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 NUCB1Q02818 461 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 NEXNQ0ZGT2 675 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 KSR2Q6VAB6 950 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 NARFQ9UHQ1 456 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 ZBTB1Q9Y2K1 713 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 USP16Q9Y5T5 823 aa12.76□□□□□ -0.37
HDAC3-214ENST00000495485 F6X3S4 739 aa12.75□□□□□ -0.37
HDAC3-214ENST00000495485 UBTFL1P0CB47 393 aaPredicted RBP12.75□□□□□ -0.37
HDAC3-214ENST00000495485 CLEC4GQ6UXB4 293 aa12.75□□□□□ -0.37
HDAC3-214ENST00000495485 CHD1LQ86WJ1 897 aa12.75□□□□□ -0.37
HDAC3-214ENST00000495485 COL23A1Q86Y22 540 aaPredicted RBP12.75□□□□□ -0.37
HDAC3-214ENST00000495485 PHAXQ9H814 394 aaKnown RBP12.75□□□□□ -0.37
HDAC3-214ENST00000495485 ATP10DQ9P241 1426 aa12.75□□□□□ -0.37
HDAC3-214ENST00000495485 USP42Q9H9J4 1324 aaKnown RBP12.74□□□□□ -0.37
HDAC3-214ENST00000495485 ANKRD45Q5TZF3 282 aa12.74□□□□□ -0.37
HDAC3-214ENST00000495485 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
HDAC3-214ENST00000495485 DCTPP1Q9H773 170 aa12.74□□□□□ -0.37
HDAC3-214ENST00000495485 ZNF652Q9Y2D9 606 aa12.74□□□□□ -0.37
HDAC3-214ENST00000495485 IBTKQ9P2D0 1353 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-214ENST00000495485 PI4KAP2A4QPH2 592 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 ERVV-1B6SEH8 477 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 MSH5O43196 834 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 CEP85Q6P2H3 762 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 PI4KAP1Q8N8J0 262 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 MEIS3Q99687 375 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 C1orf115Q9H7X2 142 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 UPF2Q9HAU5 1272 aaKnown RBP12.73□□□□□ -0.37
HDAC3-214ENST00000495485 BCORQ6W2J9 1755 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 SCN7AQ01118 1682 aa12.73□□□□□ -0.37
HDAC3-214ENST00000495485 PHF14O94880 888 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 A1BGP04217 495 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 HSP90AB4PQ58FF6 505 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 LINS1Q8NG48 757 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 NUP98P52948 1817 aa12.72□□□□□ -0.37
HDAC3-214ENST00000495485 BEND3Q5T5X7 828 aa12.71□□□□□ -0.37
HDAC3-214ENST00000495485 KIF6Q6ZMV9 814 aa12.71□□□□□ -0.37
HDAC3-214ENST00000495485 C9orf78Q9NZ63 289 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-214ENST00000495485 MAP3K2Q9Y2U5 619 aa12.71□□□□□ -0.37
HDAC3-214ENST00000495485 GYS1P13807 737 aa12.7□□□□□ -0.38
HDAC3-214ENST00000495485 HSP90AB3PQ58FF7 597 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms