RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 TAF1LQ8IZX4 1826 aa14.43□□□□□ -0.1
BRCA1-222ENST00000493919 PSDA5PKW4 1024 aaPredicted RBP14.43□□□□□ -0.1
BRCA1-222ENST00000493919 TCERG1O14776 1098 aaKnown RBP14.43□□□□□ -0.1
BRCA1-222ENST00000493919 ATP6V1AP38606 617 aa14.43□□□□□ -0.1
BRCA1-222ENST00000493919 KCPQ6ZWJ8 1503 aa14.43□□□□□ -0.1
BRCA1-222ENST00000493919 R3HDM1Q15032 1099 aaKnown RBP14.43□□□□□ -0.1
BRCA1-222ENST00000493919 LETM1O95202 739 aaPredicted RBP14.42□□□□□ -0.1
BRCA1-222ENST00000493919 ZNF790Q6PG37 636 aa14.42□□□□□ -0.1
BRCA1-222ENST00000493919 GTPBP4Q9BZE4 634 aaKnown RBP14.42□□□□□ -0.1
BRCA1-222ENST00000493919 STK32BQ9NY57 414 aa14.42□□□□□ -0.1
BRCA1-222ENST00000493919 MIS18AQ9NYP9 233 aa14.42□□□□□ -0.1
BRCA1-222ENST00000493919 C4BP0C0L5 1744 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 TJP1Q07157 1748 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 ZNF827Q17R98 1081 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 TRIM35Q9UPQ4 493 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 KDM3BQ7LBC6 1761 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 ITPK1Q13572 414 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 TAF7Q15545 349 aaPredicted RBP14.41□□□□□ -0.1
BRCA1-222ENST00000493919 CCDC27Q2M243 656 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 HSP90AB3PQ58FF7 597 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 SLC4A9Q96Q91 983 aa14.41□□□□□ -0.1
BRCA1-222ENST00000493919 ZHX1Q9UKY1 873 aaPredicted RBP14.41□□□□□ -0.1
BRCA1-222ENST00000493919 COL5A3P25940 1745 aaPredicted RBP14.4□□□□□ -0.1
BRCA1-222ENST00000493919 KCNQ3O43525 872 aa14.4□□□□□ -0.1
BRCA1-222ENST00000493919 ZNF831Q5JPB2 1677 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 LINC00116Q8NCU8 138 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 TUBGCP6Q96RT7 1819 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 SLC15A2Q16348 729 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 ZNF496Q96IT1 587 aaPredicted RBP14.39□□□□□ -0.11
BRCA1-222ENST00000493919 AK7Q96M32 723 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 TSPYL4Q9UJ04 414 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 SH3BP1Q9Y3L3 701 aa14.39□□□□□ -0.11
BRCA1-222ENST00000493919 CICQ96RK0 1608 aaPredicted RBP14.38□□□□□ -0.11
BRCA1-222ENST00000493919 FMNL2Q96PY5 1086 aa14.38□□□□□ -0.11
BRCA1-222ENST00000493919 TFCP2L1Q9NZI6 479 aa14.38□□□□□ -0.11
BRCA1-222ENST00000493919 DNAJC10Q8IXB1 793 aa14.37□□□□□ -0.11
BRCA1-222ENST00000493919 HEG1Q9ULI3 1381 aa14.37□□□□□ -0.11
BRCA1-222ENST00000493919 AKT1S1Q96B36 256 aa14.37□□□□□ -0.11
BRCA1-222ENST00000493919 GNPATO15228 680 aa14.36□□□□□ -0.11
BRCA1-222ENST00000493919 TERF1P54274 439 aa14.35□□□□□ -0.11
BRCA1-222ENST00000493919 MAPK8IP2Q13387 824 aaPredicted RBP14.35□□□□□ -0.11
BRCA1-222ENST00000493919 UBR3Q6ZT12 1888 aa14.35□□□□□ -0.11
BRCA1-222ENST00000493919 HMGB2P26583 209 aaKnown RBP14.35□□□□□ -0.11
BRCA1-222ENST00000493919 HSP90AB4PQ58FF6 505 aa14.35□□□□□ -0.11
BRCA1-222ENST00000493919 CRKLP46109 303 aaKnown RBP14.34□□□□□ -0.11
BRCA1-222ENST00000493919 NBPF9Q3BBW0 867 aa14.34□□□□□ -0.11
BRCA1-222ENST00000493919 CASC1Q6TDU7 716 aa14.34□□□□□ -0.11
BRCA1-222ENST00000493919 SMIM5Q71RC9 77 aa14.34□□□□□ -0.11
BRCA1-222ENST00000493919 FRAT1Q92837 279 aaPredicted RBP14.34□□□□□ -0.11
BRCA1-222ENST00000493919 QSER1Q2KHR3 1735 aa14.34□□□□□ -0.11
BRCA1-222ENST00000493919 LAMB4A4D0S4 1761 aa14.33□□□□□ -0.11
BRCA1-222ENST00000493919 CASZ1Q86V15 1759 aa14.33□□□□□ -0.11
BRCA1-222ENST00000493919 CNTNAP4Q9C0A0 1308 aa14.33□□□□□ -0.11
BRCA1-222ENST00000493919 PRAMEF22A3QJZ6 481 aa14.33□□□□□ -0.11
BRCA1-222ENST00000493919 PDGFDQ9GZP0 370 aaPredicted RBP14.33□□□□□ -0.11
BRCA1-222ENST00000493919 MYH14Q7Z406 1995 aaKnown RBP14.33□□□□□ -0.12
BRCA1-222ENST00000493919 PNPLA7Q6ZV29 1317 aa14.33□□□□□ -0.12
BRCA1-222ENST00000493919 AMIGO3Q86WK7 504 aa14.33□□□□□ -0.12
BRCA1-222ENST00000493919 STARD3NLO95772 234 aa14.32□□□□□ -0.12
BRCA1-222ENST00000493919 SNRPA1P09661 255 aaKnown RBP14.32□□□□□ -0.12
BRCA1-222ENST00000493919 EIF4A1P60842 406 aaKnown RBP14.32□□□□□ -0.12
BRCA1-222ENST00000493919 L1TD1Q5T7N2 865 aaKnown RBP14.32□□□□□ -0.12
BRCA1-222ENST00000493919 IFT57Q9NWB7 429 aa14.32□□□□□ -0.12
BRCA1-222ENST00000493919 CYP19A1P11511 503 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-222ENST00000493919 GNAI1P63096 354 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 MBIPQ9NS73 344 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 CCDC87Q9NVE4 849 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 ZBTB1Q9Y2K1 713 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 RTCBQ9Y3I0 505 aaKnown RBP14.31□□□□□ -0.12
BRCA1-222ENST00000493919 ZNF330Q9Y3S2 320 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-222ENST00000493919 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.31□□□□□ -0.12
BRCA1-222ENST00000493919 CHL1O00533 1208 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 BABAM1Q9NWV8 329 aa14.31□□□□□ -0.12
BRCA1-222ENST00000493919 ZBTB7AO95365 584 aa14.3□□□□□ -0.12
BRCA1-222ENST00000493919 SSFA2P28290 1259 aa14.3□□□□□ -0.12
BRCA1-222ENST00000493919 KRT24Q2M2I5 525 aa14.3□□□□□ -0.12
BRCA1-222ENST00000493919 TEX13AQ9BXU3 409 aaPredicted RBP14.3□□□□□ -0.12
BRCA1-222ENST00000493919 C4AP0C0L4 1744 aa14.3□□□□□ -0.12
BRCA1-222ENST00000493919 PIP4K2AP48426 406 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 RC3H1Q5TC82 1133 aaKnown RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 COL23A1Q86Y22 540 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 TSR2Q969E8 191 aaKnown RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 USP16Q9Y5T5 823 aa14.29□□□□□ -0.12
BRCA1-222ENST00000493919 GIGYF1O75420 1035 aaPredicted RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 INTS5Q6P9B9 1019 aaKnown RBP14.29□□□□□ -0.12
BRCA1-222ENST00000493919 RPS6KA4O75676 772 aa14.28□□□□□ -0.12
BRCA1-222ENST00000493919 A1BGP04217 495 aa14.28□□□□□ -0.12
BRCA1-222ENST00000493919 ZNF853P0CG23 659 aa14.28□□□□□ -0.12
BRCA1-222ENST00000493919 FAM177A1Q8N128 213 aaPredicted RBP14.28□□□□□ -0.12
BRCA1-222ENST00000493919 NGEFQ8N5V2 710 aa14.28□□□□□ -0.12
BRCA1-222ENST00000493919 FLAD1Q8NFF5 587 aa14.28□□□□□ -0.12
BRCA1-222ENST00000493919 COL15A1P39059 1388 aa14.27□□□□□ -0.12
BRCA1-222ENST00000493919 IL16Q14005 1332 aa14.27□□□□□ -0.13
BRCA1-222ENST00000493919 EIF2S2P20042 333 aaKnown RBP14.27□□□□□ -0.13
BRCA1-222ENST00000493919 HNRNPUQ00839 825 aaKnown RBP eCLIP14.27□□□□□ -0.13
BRCA1-222ENST00000493919 TRAPPC3LQ5T215 181 aa14.27□□□□□ -0.13
BRCA1-222ENST00000493919 MSL1Q68DK7 614 aa14.27□□□□□ -0.13
BRCA1-222ENST00000493919 WDR63Q8IWG1 891 aa14.27□□□□□ -0.13
BRCA1-222ENST00000493919 TMTC2Q8N394 836 aa14.27□□□□□ -0.13
BRCA1-222ENST00000493919 NECTIN2Q92692 538 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms