RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 KIF13BQ9NQT8 1826 aa21.06■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 MAP3K15Q6ZN16 1313 aa21.05■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 NRXN2Q9P2S2 1712 aa21.05■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 TTLL7Q6ZT98 887 aa21.05■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 TSPYL6Q8N831 410 aa21.05■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 CARMIL3Q8ND23 1372 aa21.05■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 ERVV-1B6SEH8 477 aa21.04■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 MYH16Q9H6N6 1097 aa21.04■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 SPINK5Q9NQ38 1064 aaPredicted RBP21.04■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 DBF4Q9UBU7 674 aaPredicted RBP21.04■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 AFDNP55196 1824 aaKnown RBP21.04■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 SERPINB2P05120 415 aa21.03■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 GOLGA2Q08379 1002 aa21.03■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 HLFQ16534 295 aa21.03■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 SETDB2Q96T68 719 aa21.03■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 CHMP4AQ9BY43 222 aa21.03■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 TWISTNBQ3B726 338 aaPredicted RBP21.02■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 XAGE3Q8WTP9 111 aa21.02■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 ZBTB3Q9H5J0 574 aa21.02■□□□□ 0.96
MSH5-SAPCD1-206ENST00000491552 CCDC30Q5VVM6 783 aa21.01■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 COPS6Q7L5N1 327 aa21.01■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 HYPKQ9NX55 129 aa21.01■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 AIMP1Q12904 312 aaKnown RBP21■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 NIP7Q9Y221 180 aaKnown RBP eCLIP21■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 ATP10DQ9P241 1426 aa21■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 KIAA1551Q9HCM1 1747 aa21■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 PXDNLA1KZ92 1463 aa21■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 NUP98P52948 1817 aa20.99■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 DCAF8L1A6NGE4 600 aa20.99■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 TGFB2P61812 414 aa20.99■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 EXOSC9Q06265 439 aaKnown RBP20.99■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 E9PSI1 815 aa20.98■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 GIGYF2Q6Y7W6 1299 aaKnown RBP20.98■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 N4BP2Q86UW6 1770 aaPredicted RBP20.97■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 NPHP1O15259 732 aa20.96■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 PRR5LQ6MZQ0 368 aa20.96■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 CNBD1Q8NA66 436 aa20.96■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 STK31Q9BXU1 1019 aa20.96■□□□□ 0.95
MSH5-SAPCD1-206ENST00000491552 NBPF5PQ86XG9 351 aaPredicted RBP20.95■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 VAMP4O75379 141 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 GPTP24298 496 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ST5P78524 1137 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 SLFN5Q08AF3 891 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 GPR162Q16538 588 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 HSP90AB3PQ58FF7 597 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ZNF34Q8IZ26 560 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 PELP1Q8IZL8 1130 aaKnown RBP20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 PLBD2Q8NHP8 589 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 PHAXQ9H814 394 aaKnown RBP20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ANKRD36CQ5JPF3 1778 aa20.94■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 A0A0G2JLW4 131 aa20.93■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 TCERG1O14776 1098 aaKnown RBP20.93■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 DPEP1P16444 411 aa20.93■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ANKRD13DQ6ZTN6 518 aa20.93■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 UBN2Q6ZU65 1347 aa20.93■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 FAM177BA6PVY3 158 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 TPTE2Q6XPS3 522 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 CCDC24Q8N4L8 307 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 NYXQ9GZU5 481 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 IBTKQ9P2D0 1353 aaPredicted RBP20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ARFGEF2Q9Y6D5 1785 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 ANKRD31Q8N7Z5 1873 aa20.92■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 HNRNPUQ00839 825 aaKnown RBP eCLIP20.91■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 PARP10Q53GL7 1025 aa20.91■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 CDCA7LQ96GN5 454 aa20.91■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 BRIP1Q9BX63 1249 aa20.91■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 YBX3P16989 372 aaKnown RBP eCLIP20.9■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 CHRNA5P30532 468 aa20.9■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 TCIRG1Q13488 830 aa20.9■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 WWC3Q9ULE0 1092 aa20.9■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 BRCA1P38398 1863 aaKnown RBP20.9■□□□□ 0.94
MSH5-SAPCD1-206ENST00000491552 DDX58O95786 925 aaKnown RBP20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 SLC4A2P04920 1241 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 KCNA3P22001 575 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PDE6BP35913 854 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 SUSD4Q5VX71 490 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PPP1R42Q7Z4L9 355 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 RIC3Q7Z5B4 369 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 DLEC1Q9Y238 1755 aa20.89■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 GTF2E1P29083 439 aaPredicted RBP20.88■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 C2CD5Q86YS7 1000 aa20.88■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 TRMT2AQ8IZ69 625 aaKnown RBP20.88■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PDZRN3Q9UPQ7 1066 aa20.88■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 COL11A2P13942 1736 aaPredicted RBP20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 NTSR2O95665 410 aa20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 G2E3Q7L622 706 aa20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 NLRP10Q86W26 655 aa20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 NUTM1Q86Y26 1132 aa20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 PIM2Q9P1W9 311 aa20.87■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 ABCC12Q96J65 1359 aa20.86■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 H0YIN7 160 aa20.86■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 ISCA1Q9BUE6 129 aa20.86■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 UTP14AQ9BVJ6 771 aaKnown RBP20.86■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 CACNA1FO60840 1977 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 GRIN3BO60391 1043 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 FLIIQ13045 1269 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 ERFEQ4G0M1 354 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 BCS1LQ9Y276 419 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 RIC1Q4ADV7 1423 aa20.85■□□□□ 0.93
MSH5-SAPCD1-206ENST00000491552 RNF123Q5XPI4 1314 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms