RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 RUNDC1Q96C34 613 aa23.68■■□□□ 1.38
HMGN1-219ENST00000491183 PDZRN3Q9UPQ7 1066 aa23.68■■□□□ 1.38
HMGN1-219ENST00000491183 COL11A2P13942 1736 aaPredicted RBP23.67■■□□□ 1.38
HMGN1-219ENST00000491183 LMOD3Q0VAK6 560 aa23.67■■□□□ 1.38
HMGN1-219ENST00000491183 ZNF622Q969S3 477 aaKnown RBP eCLIP23.67■■□□□ 1.38
HMGN1-219ENST00000491183 SENP3-EIF4A1A0A087X0R7 540 aa23.66■■□□□ 1.38
HMGN1-219ENST00000491183 KIF3CO14782 793 aa23.66■■□□□ 1.38
HMGN1-219ENST00000491183 BABAM1Q9NWV8 329 aa23.66■■□□□ 1.38
HMGN1-219ENST00000491183 TRIM35Q9UPQ4 493 aa23.66■■□□□ 1.38
HMGN1-219ENST00000491183 NIP7Q9Y221 180 aaKnown RBP eCLIP23.66■■□□□ 1.38
HMGN1-219ENST00000491183 NPHP1O15259 732 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 PRELPP51888 382 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 ST5P78524 1137 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 RASSF7Q02833 373 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 TTLL7Q6ZT98 887 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 NBPF5PQ86XG9 351 aaPredicted RBP23.65■■□□□ 1.38
HMGN1-219ENST00000491183 RNF181Q9P0P0 153 aa23.65■■□□□ 1.38
HMGN1-219ENST00000491183 MYL6BP14649 208 aa23.64■■□□□ 1.37
HMGN1-219ENST00000491183 SRGNP10124 158 aa23.63■■□□□ 1.37
HMGN1-219ENST00000491183 NUP98P52948 1817 aa23.62■■□□□ 1.37
HMGN1-219ENST00000491183 ERVV-1B6SEH8 477 aa23.62■■□□□ 1.37
HMGN1-219ENST00000491183 ZEB1P37275 1124 aaPredicted RBP23.62■■□□□ 1.37
HMGN1-219ENST00000491183 TPTE2Q6XPS3 522 aa23.62■■□□□ 1.37
HMGN1-219ENST00000491183 MAP3K15Q6ZN16 1313 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 FAM177BA6PVY3 158 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 NFKBIEO00221 500 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 CHL1O00533 1208 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 PDIA6Q15084 440 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 STYK1Q6J9G0 422 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 LRP10Q7Z4F1 713 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 NMRK2Q9NPI5 230 aa23.61■■□□□ 1.37
HMGN1-219ENST00000491183 ERBB4Q15303 1308 aa23.6■■□□□ 1.37
HMGN1-219ENST00000491183 CCDC88AQ3V6T2 1871 aa23.6■■□□□ 1.37
HMGN1-219ENST00000491183 C21orf2O43822 256 aa23.6■■□□□ 1.37
HMGN1-219ENST00000491183 EIF2S2P20042 333 aaKnown RBP23.6■■□□□ 1.37
HMGN1-219ENST00000491183 ZNF219Q9P2Y4 722 aaPredicted RBP23.6■■□□□ 1.37
HMGN1-219ENST00000491183 SLX4Q8IY92 1834 aa23.6■■□□□ 1.37
HMGN1-219ENST00000491183 KLRG2A4D1S0 409 aaPredicted RBP23.59■■□□□ 1.37
HMGN1-219ENST00000491183 MASTLQ96GX5 879 aa23.59■■□□□ 1.37
HMGN1-219ENST00000491183 CACNA1SQ13698 1873 aa23.58■■□□□ 1.37
HMGN1-219ENST00000491183 LMNB1P20700 586 aa23.58■■□□□ 1.37
HMGN1-219ENST00000491183 KIF6Q6ZMV9 814 aa23.58■■□□□ 1.37
HMGN1-219ENST00000491183 CNKSR1Q969H4 720 aa23.58■■□□□ 1.37
HMGN1-219ENST00000491183 ZBTB3Q9H5J0 574 aa23.58■■□□□ 1.37
HMGN1-219ENST00000491183 KRT24Q2M2I5 525 aa23.57■■□□□ 1.36
HMGN1-219ENST00000491183 PROSER3Q2NL68 480 aa23.57■■□□□ 1.36
HMGN1-219ENST00000491183 LAS1LQ9Y4W2 734 aaKnown RBP23.57■■□□□ 1.36
HMGN1-219ENST00000491183 FER1L6Q2WGJ9 1857 aa23.56■■□□□ 1.36
HMGN1-219ENST00000491183 ANXA1P04083 346 aa23.56■■□□□ 1.36
HMGN1-219ENST00000491183 PRPF40BQ6NWY9 871 aaKnown RBP23.56■■□□□ 1.36
HMGN1-219ENST00000491183 ARFGEF2Q9Y6D5 1785 aa23.55■■□□□ 1.36
HMGN1-219ENST00000491183 CCDC184Q52MB2 194 aa23.55■■□□□ 1.36
HMGN1-219ENST00000491183 NECTIN2Q92692 538 aa23.55■■□□□ 1.36
HMGN1-219ENST00000491183 APAF1O14727 1248 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 NPR1P16066 1061 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 GPTP24298 496 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 GIGYF2Q6Y7W6 1299 aaKnown RBP23.54■■□□□ 1.36
HMGN1-219ENST00000491183 NUTM1Q86Y26 1132 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 ZNF34Q8IZ26 560 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 C7orf43Q8WVR3 580 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 UBN2Q6ZU65 1347 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 KDM2BQ8NHM5 1336 aa23.54■■□□□ 1.36
HMGN1-219ENST00000491183 GTF2E1P29083 439 aaPredicted RBP23.53■■□□□ 1.36
HMGN1-219ENST00000491183 SUSD4Q5VX71 490 aa23.53■■□□□ 1.36
HMGN1-219ENST00000491183 TOMM70O94826 608 aa23.52■■□□□ 1.36
HMGN1-219ENST00000491183 ERFEQ4G0M1 354 aa23.52■■□□□ 1.36
HMGN1-219ENST00000491183 NYXQ9GZU5 481 aa23.52■■□□□ 1.36
HMGN1-219ENST00000491183 RRAGCQ9HB90 399 aa23.52■■□□□ 1.36
HMGN1-219ENST00000491183 ZC3H4Q9UPT8 1303 aaKnown RBP23.52■■□□□ 1.36
HMGN1-219ENST00000491183 ABCC12Q96J65 1359 aa23.52■■□□□ 1.36
HMGN1-219ENST00000491183 CFAP44Q96MT7 982 aa23.51■■□□□ 1.35
HMGN1-219ENST00000491183 TNRC6CQ9HCJ0 1690 aaKnown RBP23.51■■□□□ 1.35
HMGN1-219ENST00000491183 HSPA6P17066 643 aa23.5■■□□□ 1.35
HMGN1-219ENST00000491183 COPS6Q7L5N1 327 aa23.5■■□□□ 1.35
HMGN1-219ENST00000491183 LTBP3Q9NS15 1303 aa23.5■■□□□ 1.35
HMGN1-219ENST00000491183 DICER1Q9UPY3 1922 aaKnown RBP23.49■■□□□ 1.35
HMGN1-219ENST00000491183 DDX21Q9NR30 783 aaKnown RBP eCLIP23.49■■□□□ 1.35
HMGN1-219ENST00000491183 TIAM2Q8IVF5 1701 aa23.49■■□□□ 1.35
HMGN1-219ENST00000491183 ZNF316A6NFI3 1004 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-219ENST00000491183 GLTPD2A6NH11 291 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 NTSR2O95665 410 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 ZNF853P0CG23 659 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 AIMP1Q12904 312 aaKnown RBP23.48■■□□□ 1.35
HMGN1-219ENST00000491183 CRY2Q49AN0 593 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 SOGA3Q5TF21 947 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 XAGE3Q8WTP9 111 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 TAOK3Q9H2K8 898 aa23.48■■□□□ 1.35
HMGN1-219ENST00000491183 IBTKQ9P2D0 1353 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-219ENST00000491183 OLFM4Q6UX06 510 aa23.47■■□□□ 1.35
HMGN1-219ENST00000491183 MBIPQ9NS73 344 aa23.47■■□□□ 1.35
HMGN1-219ENST00000491183 ALDH1B1P30837 517 aa23.46■■□□□ 1.35
HMGN1-219ENST00000491183 CHPF2Q9P2E5 772 aa23.46■■□□□ 1.35
HMGN1-219ENST00000491183 HOXB7P09629 217 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 PARP10Q53GL7 1025 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 CCDC93Q567U6 631 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 HDGFL1Q5TGJ6 251 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 DUSP27Q5VZP5 1158 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 PPP1R42Q7Z4L9 355 aa23.45■■□□□ 1.34
HMGN1-219ENST00000491183 RBM46Q8TBY0 533 aaKnown RBP23.45■■□□□ 1.34
HMGN1-219ENST00000491183 RIC1Q4ADV7 1423 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms