RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SLC39A6Q13433 755 aa11.17□□□□□ -0.62
USP39-216ENST00000490193 PDZRN3Q9UPQ7 1066 aa11.17□□□□□ -0.62
USP39-216ENST00000490193 POTECB2RU33 542 aa11.16□□□□□ -0.62
USP39-216ENST00000490193 H0YIN7 160 aa11.16□□□□□ -0.62
USP39-216ENST00000490193 EIF5P55010 431 aaKnown RBP11.16□□□□□ -0.62
USP39-216ENST00000490193 C2CD5Q86YS7 1000 aa11.16□□□□□ -0.62
USP39-216ENST00000490193 KNSTRNQ9Y448 316 aa11.16□□□□□ -0.62
USP39-216ENST00000490193 BCORQ6W2J9 1755 aa11.16□□□□□ -0.62
USP39-216ENST00000490193 LTBP3Q9NS15 1303 aa11.15□□□□□ -0.62
USP39-216ENST00000490193 AMER1Q5JTC6 1135 aaPredicted RBP11.15□□□□□ -0.62
USP39-216ENST00000490193 CACNA1SQ13698 1873 aa11.15□□□□□ -0.63
USP39-216ENST00000490193 A0A087WZG4 1122 aa11.14□□□□□ -0.63
USP39-216ENST00000490193 POTEB2H3BUK9 544 aa11.14□□□□□ -0.63
USP39-216ENST00000490193 STARD3NLO95772 234 aa11.14□□□□□ -0.63
USP39-216ENST00000490193 MTHFSDQ2M296 383 aaKnown RBP11.14□□□□□ -0.63
USP39-216ENST00000490193 DPY19L2Q6NUT2 758 aa11.14□□□□□ -0.63
USP39-216ENST00000490193 BRIP1Q9BX63 1249 aa11.14□□□□□ -0.63
USP39-216ENST00000490193 CANXP27824 592 aaKnown RBP11.13□□□□□ -0.63
USP39-216ENST00000490193 PDE6BP35913 854 aa11.13□□□□□ -0.63
USP39-216ENST00000490193 SCN4AP35499 1836 aa11.13□□□□□ -0.63
USP39-216ENST00000490193 SLX4Q8IY92 1834 aa11.13□□□□□ -0.63
USP39-216ENST00000490193 HMOX1P09601 288 aa11.12□□□□□ -0.63
USP39-216ENST00000490193 TBC1D9BQ66K14 1250 aa11.12□□□□□ -0.63
USP39-216ENST00000490193 PRR5LQ6MZQ0 368 aa11.12□□□□□ -0.63
USP39-216ENST00000490193 TEX13AQ9BXU3 409 aaPredicted RBP11.12□□□□□ -0.63
USP39-216ENST00000490193 HEG1Q9ULI3 1381 aa11.12□□□□□ -0.63
USP39-216ENST00000490193 COL3A1P02461 1466 aaPredicted RBP11.12□□□□□ -0.63
USP39-216ENST00000490193 C21orf2O43822 256 aa11.11□□□□□ -0.63
USP39-216ENST00000490193 IL6STP40189 918 aaPredicted RBP11.11□□□□□ -0.63
USP39-216ENST00000490193 ERFEQ4G0M1 354 aa11.11□□□□□ -0.63
USP39-216ENST00000490193 TTC5Q8N0Z6 440 aa11.11□□□□□ -0.63
USP39-216ENST00000490193 ZNF496Q96IT1 587 aaPredicted RBP11.11□□□□□ -0.63
USP39-216ENST00000490193 DIAPH1O60610 1272 aaKnown RBP11.1□□□□□ -0.63
USP39-216ENST00000490193 ZNF790Q6PG37 636 aa11.1□□□□□ -0.63
USP39-216ENST00000490193 BICDL1Q6ZP65 573 aa11.1□□□□□ -0.63
USP39-216ENST00000490193 ZNF622Q969S3 477 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP39-216ENST00000490193 TAOK3Q9H2K8 898 aa11.1□□□□□ -0.63
USP39-216ENST00000490193 ADAMTSL1Q8N6G6 1762 aa11.09□□□□□ -0.63
USP39-216ENST00000490193 CEMIPQ8WUJ3 1361 aa11.09□□□□□ -0.63
USP39-216ENST00000490193 SOGA3Q5TF21 947 aa11.09□□□□□ -0.63
USP39-216ENST00000490193 STYK1Q6J9G0 422 aa11.09□□□□□ -0.63
USP39-216ENST00000490193 CNKSR1Q969H4 720 aa11.09□□□□□ -0.63
USP39-216ENST00000490193 CNTNAP1P78357 1384 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 PER1O15534 1290 aaPredicted RBP11.08□□□□□ -0.64
USP39-216ENST00000490193 CAMTA2O94983 1202 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 SRGNP10124 158 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 TEFQ10587 303 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 CNBD1Q8NA66 436 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 IL17REQ8NFR9 667 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 L3MBTL3Q96JM7 780 aaPredicted RBP11.08□□□□□ -0.64
USP39-216ENST00000490193 TBC1D2BQ9UPU7 963 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 PASKQ96RG2 1323 aa11.08□□□□□ -0.64
USP39-216ENST00000490193 NPC1L1Q9UHC9 1359 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 IQCA1LA6NCM1 817 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 POTEMA6NI47 508 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 GNAT3A8MTJ3 354 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 DDNO94850 711 aaPredicted RBP11.07□□□□□ -0.64
USP39-216ENST00000490193 POTEJP0CG39 1038 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 PRPF40BQ6NWY9 871 aaKnown RBP11.07□□□□□ -0.64
USP39-216ENST00000490193 GAS2L2Q8NHY3 880 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 C7orf43Q8WVR3 580 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 MASTLQ96GX5 879 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 FMNL2Q96PY5 1086 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 SETDB2Q96T68 719 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 PCDH10Q9P2E7 1040 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 KIF7Q2M1P5 1343 aa11.07□□□□□ -0.64
USP39-216ENST00000490193 RGL2O15211 777 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 A1BGP04217 495 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 ST5P78524 1137 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 LDHDQ86WU2 507 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 CCDC24Q8N4L8 307 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 PRDM10Q9NQV6 1147 aa11.06□□□□□ -0.64
USP39-216ENST00000490193 MKRN1Q9UHC7 482 aaKnown RBP11.06□□□□□ -0.64
USP39-216ENST00000490193 KLRG2A4D1S0 409 aaPredicted RBP11.05□□□□□ -0.64
USP39-216ENST00000490193 CLEC4GQ6UXB4 293 aa11.05□□□□□ -0.64
USP39-216ENST00000490193 PHF12Q96QT6 1004 aa11.05□□□□□ -0.64
USP39-216ENST00000490193 TAF1DQ9H5J8 278 aaPredicted RBP11.05□□□□□ -0.64
USP39-216ENST00000490193 FOXN1O15353 648 aa11.04□□□□□ -0.64
USP39-216ENST00000490193 ITGBL1O95965 494 aaPredicted RBP11.04□□□□□ -0.64
USP39-216ENST00000490193 CCDC93Q567U6 631 aa11.04□□□□□ -0.64
USP39-216ENST00000490193 NPM2Q86SE8 214 aaKnown RBP11.04□□□□□ -0.64
USP39-216ENST00000490193 DZIP3Q86Y13 1208 aaKnown RBP11.04□□□□□ -0.64
USP39-216ENST00000490193 ZNF330Q9Y3S2 320 aaPredicted RBP11.04□□□□□ -0.64
USP39-216ENST00000490193 LAMB4A4D0S4 1761 aa11.03□□□□□ -0.64
USP39-216ENST00000490193 SNED1Q8TER0 1413 aa11.03□□□□□ -0.64
USP39-216ENST00000490193 NPR1P16066 1061 aa11.03□□□□□ -0.64
USP39-216ENST00000490193 MNX1P50219 401 aaPredicted RBP11.03□□□□□ -0.64
USP39-216ENST00000490193 FKBP4Q02790 459 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP39-216ENST00000490193 PCGF6Q9BYE7 350 aa11.03□□□□□ -0.64
USP39-216ENST00000490193 THSD7BQ9C0I4 1608 aa11.02□□□□□ -0.64
USP39-216ENST00000490193 TMEM88BA6NKF7 163 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 BTBD11A6QL63 1104 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 U2SURPO15042 1029 aaKnown RBP11.02□□□□□ -0.65
USP39-216ENST00000490193 NPHP1O15259 732 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 FAM161AQ3B820 660 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 CC2D1BQ5T0F9 858 aaKnown RBP11.02□□□□□ -0.65
USP39-216ENST00000490193 POTEGQ6S5H5 508 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 NBPF5PQ86XG9 351 aaPredicted RBP11.02□□□□□ -0.65
USP39-216ENST00000490193 ZNF652Q9Y2D9 606 aa11.02□□□□□ -0.65
USP39-216ENST00000490193 USP16Q9Y5T5 823 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms