RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 BICDL1Q6ZP65 573 aa12.85□□□□□ -0.35
TMEM39A-210ENST00000490099 C2CD5Q86YS7 1000 aa12.85□□□□□ -0.35
TMEM39A-210ENST00000490099 SCN7AQ01118 1682 aa12.85□□□□□ -0.35
TMEM39A-210ENST00000490099 H0YIN7 160 aa12.84□□□□□ -0.35
TMEM39A-210ENST00000490099 KIF3CO14782 793 aa12.84□□□□□ -0.35
TMEM39A-210ENST00000490099 PIP4K2AP48426 406 aaPredicted RBP12.84□□□□□ -0.35
TMEM39A-210ENST00000490099 TTLL6Q8N841 843 aa12.84□□□□□ -0.35
TMEM39A-210ENST00000490099 MAPK8IP3Q9UPT6 1336 aa12.84□□□□□ -0.35
TMEM39A-210ENST00000490099 ERVV-1B6SEH8 477 aa12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 PDE6BP35913 854 aa12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 RIPK4P57078 832 aa12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 C9orf131Q5VYM1 1079 aa12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 NPM2Q86SE8 214 aaKnown RBP12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 PRKRIP1Q9H875 184 aaPredicted RBP12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 ZNF330Q9Y3S2 320 aaPredicted RBP12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
TMEM39A-210ENST00000490099 ZEB1P37275 1124 aaPredicted RBP12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 PRELPP51888 382 aa12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 LRP10Q7Z4F1 713 aa12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 ZNF652Q9Y2D9 606 aa12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 ANKRD31Q8N7Z5 1873 aa12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 ERBB4Q15303 1308 aa12.82□□□□□ -0.36
TMEM39A-210ENST00000490099 DLEC1Q9Y238 1755 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 CHL1O00533 1208 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 SRGNP10124 158 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 HLFQ16534 295 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 STYK1Q6J9G0 422 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 CNBD1Q8NA66 436 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 C7orf43Q8WVR3 580 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 ADAMTS8Q9UP79 889 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 TRIM35Q9UPQ4 493 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 ZC3H4Q9UPT8 1303 aaKnown RBP12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 BCORQ6W2J9 1755 aa12.81□□□□□ -0.36
TMEM39A-210ENST00000490099 SBF1O95248 1867 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 NFKBIEO00221 500 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 LMOD3Q0VAK6 560 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 PDIA6Q15084 440 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 CCDC24Q8N4L8 307 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 ZNF526Q8TF50 670 aaPredicted RBP12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 RUNDC1Q96C34 613 aa12.8□□□□□ -0.36
TMEM39A-210ENST00000490099 LMNB1P20700 586 aa12.79□□□□□ -0.36
TMEM39A-210ENST00000490099 TPTE2Q6XPS3 522 aa12.79□□□□□ -0.36
TMEM39A-210ENST00000490099 TSPYL4Q9UJ04 414 aa12.79□□□□□ -0.36
TMEM39A-210ENST00000490099 NIP7Q9Y221 180 aaKnown RBP eCLIP12.79□□□□□ -0.36
TMEM39A-210ENST00000490099 MAP3K15Q6ZN16 1313 aa12.79□□□□□ -0.36
TMEM39A-210ENST00000490099 SENP3-EIF4A1A0A087X0R7 540 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 ST5P78524 1137 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 TTLL7Q6ZT98 887 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 NBPF5PQ86XG9 351 aaPredicted RBP12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 CNKSR1Q969H4 720 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 MASTLQ96GX5 879 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 RNF181Q9P0P0 153 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 LTBP3Q9NS15 1303 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 LAMB4A4D0S4 1761 aa12.78□□□□□ -0.36
TMEM39A-210ENST00000490099 TOMM70O94826 608 aa12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 RASSF7Q02833 373 aa12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 CCDC146Q8IYE0 955 aa12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 ZNF34Q8IZ26 560 aa12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 ZNF622Q969S3 477 aaKnown RBP eCLIP12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 NMRK2Q9NPI5 230 aa12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 RRP7AQ9Y3A4 280 aaKnown RBP12.77□□□□□ -0.37
TMEM39A-210ENST00000490099 NPR1P16066 1061 aa12.76□□□□□ -0.37
TMEM39A-210ENST00000490099 CRY2Q49AN0 593 aa12.76□□□□□ -0.37
TMEM39A-210ENST00000490099 PRPF40BQ6NWY9 871 aaKnown RBP12.76□□□□□ -0.37
TMEM39A-210ENST00000490099 C21orf2O43822 256 aa12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 ZNF853P0CG23 659 aa12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 COL11A2P13942 1736 aaPredicted RBP12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 HSPA6P17066 643 aa12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 WDR43Q15061 677 aaKnown RBP eCLIP12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 GIGYF2Q6Y7W6 1299 aaKnown RBP12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 KDM2BQ8NHM5 1336 aa12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 IBTKQ9P2D0 1353 aaPredicted RBP12.75□□□□□ -0.37
TMEM39A-210ENST00000490099 SLX4Q8IY92 1834 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 RIC1Q4ADV7 1423 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 UBN2Q6ZU65 1347 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 GLTPD2A6NH11 291 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 MYL6BP14649 208 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 HOXA10P31260 410 aaPredicted RBP12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 PROSER3Q2NL68 480 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 SOGA3Q5TF21 947 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 NGEFQ8N5V2 710 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 RBM46Q8TBY0 533 aaKnown RBP12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 CFAP44Q96MT7 982 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 NYXQ9GZU5 481 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 FER1L6Q2WGJ9 1857 aa12.74□□□□□ -0.37
TMEM39A-210ENST00000490099 HOXB7P09629 217 aa12.73□□□□□ -0.37
TMEM39A-210ENST00000490099 SLC10A5Q5PT55 438 aa12.73□□□□□ -0.37
TMEM39A-210ENST00000490099 SUSD4Q5VX71 490 aa12.73□□□□□ -0.37
TMEM39A-210ENST00000490099 KIF6Q6ZMV9 814 aa12.73□□□□□ -0.37
TMEM39A-210ENST00000490099 DDX21Q9NR30 783 aaKnown RBP eCLIP12.73□□□□□ -0.37
TMEM39A-210ENST00000490099 NUP98P52948 1817 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 POTECB2RU33 542 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 NPHP1O15259 732 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 EIF2S2P20042 333 aaKnown RBP12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 NEUROD2Q15784 382 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 KRT24Q2M2I5 525 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 TAOK3Q9H2K8 898 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 ZBTB3Q9H5J0 574 aa12.72□□□□□ -0.37
TMEM39A-210ENST00000490099 SNED1Q8TER0 1413 aa12.71□□□□□ -0.37
TMEM39A-210ENST00000490099 ABCC12Q96J65 1359 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 256 ms