RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PDE6BP35913 854 aa22.12■■□□□ 1.13
VIM-205ENST00000485947 BICDL1Q6ZP65 573 aa22.12■■□□□ 1.13
VIM-205ENST00000485947 ZNF526Q8TF50 670 aaPredicted RBP22.12■■□□□ 1.13
VIM-205ENST00000485947 ERVV-1B6SEH8 477 aa22.11■■□□□ 1.13
VIM-205ENST00000485947 BRCA1P38398 1863 aaKnown RBP22.11■■□□□ 1.13
VIM-205ENST00000485947 CHRNA5P30532 468 aa22.1■■□□□ 1.13
VIM-205ENST00000485947 WWC3Q9ULE0 1092 aa22.1■■□□□ 1.13
VIM-205ENST00000485947 AFDNP55196 1824 aaKnown RBP22.09■■□□□ 1.13
VIM-205ENST00000485947 KIF3CO14782 793 aa22.09■■□□□ 1.13
VIM-205ENST00000485947 PRR5LQ6MZQ0 368 aa22.09■■□□□ 1.13
VIM-205ENST00000485947 ARHGAP27Q6ZUM4 889 aa22.09■■□□□ 1.13
VIM-205ENST00000485947 CNBD1Q8NA66 436 aa22.09■■□□□ 1.13
VIM-205ENST00000485947 LAMB4A4D0S4 1761 aa22.09■■□□□ 1.13
VIM-205ENST00000485947 CHL1O00533 1208 aa22.08■■□□□ 1.13
VIM-205ENST00000485947 ST5P78524 1137 aa22.08■■□□□ 1.13
VIM-205ENST00000485947 C2CD5Q86YS7 1000 aa22.08■■□□□ 1.13
VIM-205ENST00000485947 DNAJC5GQ8N7S2 189 aa22.08■■□□□ 1.13
VIM-205ENST00000485947 TTLL6Q8N841 843 aa22.08■■□□□ 1.13
VIM-205ENST00000485947 ARFGEF1Q9Y6D6 1849 aa22.08■■□□□ 1.12
VIM-205ENST00000485947 BCORQ6W2J9 1755 aa22.07■■□□□ 1.12
VIM-205ENST00000485947 PIP4K2AP48426 406 aaPredicted RBP22.07■■□□□ 1.12
VIM-205ENST00000485947 TPTE2Q6XPS3 522 aa22.07■■□□□ 1.12
VIM-205ENST00000485947 TRIM35Q9UPQ4 493 aa22.07■■□□□ 1.12
VIM-205ENST00000485947 NPHP1O15259 732 aa22.06■■□□□ 1.12
VIM-205ENST00000485947 CALD1Q05682 793 aaKnown RBP22.06■■□□□ 1.12
VIM-205ENST00000485947 CCDC27Q2M243 656 aa22.06■■□□□ 1.12
VIM-205ENST00000485947 APLP1P51693 650 aa22.05■■□□□ 1.12
VIM-205ENST00000485947 NEUROD2Q15784 382 aa22.05■■□□□ 1.12
VIM-205ENST00000485947 KIF6Q6ZMV9 814 aa22.05■■□□□ 1.12
VIM-205ENST00000485947 NBPF5PQ86XG9 351 aaPredicted RBP22.05■■□□□ 1.12
VIM-205ENST00000485947 RRP7AQ9Y3A4 280 aaKnown RBP22.05■■□□□ 1.12
VIM-205ENST00000485947 MAP3K15Q6ZN16 1313 aa22.05■■□□□ 1.12
VIM-205ENST00000485947 ZNF521Q96K83 1311 aa22.05■■□□□ 1.12
VIM-205ENST00000485947 HOXB7P09629 217 aa22.04■■□□□ 1.12
VIM-205ENST00000485947 NIP7Q9Y221 180 aaKnown RBP eCLIP22.04■■□□□ 1.12
VIM-205ENST00000485947 CFAP44Q96MT7 982 aa22.03■■□□□ 1.12
VIM-205ENST00000485947 SALL2Q9Y467 1007 aaPredicted RBP22.03■■□□□ 1.12
VIM-205ENST00000485947 STYK1Q6J9G0 422 aa22.02■■□□□ 1.12
VIM-205ENST00000485947 CNKSR1Q969H4 720 aa22.02■■□□□ 1.12
VIM-205ENST00000485947 NYXQ9GZU5 481 aa22.02■■□□□ 1.12
VIM-205ENST00000485947 DLEC1Q9Y238 1755 aa22.02■■□□□ 1.11
VIM-205ENST00000485947 KLRG2A4D1S0 409 aaPredicted RBP22.01■■□□□ 1.11
VIM-205ENST00000485947 ZC3H4Q9UPT8 1303 aaKnown RBP22.01■■□□□ 1.11
VIM-205ENST00000485947 MASTLQ96GX5 879 aa22■■□□□ 1.11
VIM-205ENST00000485947 IBTKQ9P2D0 1353 aaPredicted RBP21.99■■□□□ 1.11
VIM-205ENST00000485947 SRGNP10124 158 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 MYL6BP14649 208 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 PDIA6Q15084 440 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 HLFQ16534 295 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 SOGA3Q5TF21 947 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 WWC1Q8IX03 1113 aa21.99■■□□□ 1.11
VIM-205ENST00000485947 ZNF622Q969S3 477 aaKnown RBP eCLIP21.99■■□□□ 1.11
VIM-205ENST00000485947 EIF2S2P20042 333 aaKnown RBP21.98■■□□□ 1.11
VIM-205ENST00000485947 C9orf131Q5VYM1 1079 aa21.98■■□□□ 1.11
VIM-205ENST00000485947 GIGYF2Q6Y7W6 1299 aaKnown RBP21.98■■□□□ 1.11
VIM-205ENST00000485947 LRP10Q7Z4F1 713 aa21.98■■□□□ 1.11
VIM-205ENST00000485947 CHMP4AQ9BY43 222 aa21.98■■□□□ 1.11
VIM-205ENST00000485947 IFT57Q9NWB7 429 aa21.98■■□□□ 1.11
VIM-205ENST00000485947 ZNF853P0CG23 659 aa21.97■■□□□ 1.11
VIM-205ENST00000485947 GTF2E1P29083 439 aaPredicted RBP21.97■■□□□ 1.11
VIM-205ENST00000485947 GNAI1P63096 354 aa21.97■■□□□ 1.11
VIM-205ENST00000485947 GOLGA2Q08379 1002 aa21.97■■□□□ 1.11
VIM-205ENST00000485947 TTLL7Q6ZT98 887 aa21.97■■□□□ 1.11
VIM-205ENST00000485947 WDR63Q8IWG1 891 aa21.97■■□□□ 1.11
VIM-205ENST00000485947 DDX21Q9NR30 783 aaKnown RBP eCLIP21.97■■□□□ 1.11
VIM-205ENST00000485947 NPR1P16066 1061 aa21.96■■□□□ 1.11
VIM-205ENST00000485947 LMNB1P20700 586 aa21.96■■□□□ 1.11
VIM-205ENST00000485947 PARP10Q53GL7 1025 aa21.96■■□□□ 1.11
VIM-205ENST00000485947 LAS1LQ9Y4W2 734 aaKnown RBP21.96■■□□□ 1.11
VIM-205ENST00000485947 ANKRD31Q8N7Z5 1873 aa21.96■■□□□ 1.11
VIM-205ENST00000485947 HSP90AB3PQ58FF7 597 aa21.95■■□□□ 1.1
VIM-205ENST00000485947 ZNF34Q8IZ26 560 aa21.95■■□□□ 1.1
VIM-205ENST00000485947 PCNTO95613 3336 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 TOMM70O94826 608 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 COL13A1Q5TAT6 717 aaPredicted RBP21.94■■□□□ 1.1
VIM-205ENST00000485947 RNF181Q9P0P0 153 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 RNF123Q5XPI4 1314 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 LTBP3Q9NS15 1303 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 RIC1Q4ADV7 1423 aa21.94■■□□□ 1.1
VIM-205ENST00000485947 ALDH1B1P30837 517 aa21.93■■□□□ 1.1
VIM-205ENST00000485947 PPP1R42Q7Z4L9 355 aa21.93■■□□□ 1.1
VIM-205ENST00000485947 CCDC24Q8N4L8 307 aa21.93■■□□□ 1.1
VIM-205ENST00000485947 WDR90Q96KV7 1748 aa21.93■■□□□ 1.1
VIM-205ENST00000485947 ZBTB3Q9H5J0 574 aa21.93■■□□□ 1.1
VIM-205ENST00000485947 DBF4Q9UBU7 674 aaPredicted RBP21.93■■□□□ 1.1
VIM-205ENST00000485947 IL16Q14005 1332 aa21.92■■□□□ 1.1
VIM-205ENST00000485947 KDM2BQ8NHM5 1336 aa21.92■■□□□ 1.1
VIM-205ENST00000485947 E9PSI1 815 aa21.92■■□□□ 1.1
VIM-205ENST00000485947 HDGFL1Q5TGJ6 251 aa21.92■■□□□ 1.1
VIM-205ENST00000485947 MBIPQ9NS73 344 aa21.92■■□□□ 1.1
VIM-205ENST00000485947 CRY2Q49AN0 593 aa21.91■■□□□ 1.1
VIM-205ENST00000485947 PRPF40BQ6NWY9 871 aaKnown RBP21.91■■□□□ 1.1
VIM-205ENST00000485947 C21orf2O43822 256 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 SLFN5Q08AF3 891 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 DUSP27Q5VZP5 1158 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 COPS6Q7L5N1 327 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 HYPKQ9NX55 129 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 NUP98P52948 1817 aa21.9■■□□□ 1.1
VIM-205ENST00000485947 NFKBIEO00221 500 aa21.89■■□□□ 1.09
VIM-205ENST00000485947 PROSER3Q2NL68 480 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms