RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 NBPF10Q6P3W6 841 aaKnown RBP10.11□□□□□ -0.79
VPS50-212ENST00000476413 TRIM46Q7Z4K8 759 aa10.11□□□□□ -0.79
VPS50-212ENST00000476413 IFT43Q96FT9 208 aa10.11□□□□□ -0.79
VPS50-212ENST00000476413 FAM129BQ96TA1 746 aa10.11□□□□□ -0.79
VPS50-212ENST00000476413 BRPF3Q9ULD4 1205 aa10.11□□□□□ -0.79
VPS50-212ENST00000476413 COL19A1Q14993 1142 aa10.1□□□□□ -0.79
VPS50-212ENST00000476413 PRICKLE2Q7Z3G6 844 aa10.1□□□□□ -0.79
VPS50-212ENST00000476413 GIPC2Q8TF65 315 aa10.1□□□□□ -0.79
VPS50-212ENST00000476413 CITED4Q96RK1 184 aa10.1□□□□□ -0.79
VPS50-212ENST00000476413 KIAA1522Q9P206 1035 aaPredicted RBP10.1□□□□□ -0.79
VPS50-212ENST00000476413 E9PSI1 815 aa10.09□□□□□ -0.79
VPS50-212ENST00000476413 TREHO43280 583 aa10.09□□□□□ -0.79
VPS50-212ENST00000476413 SMCPP49901 116 aaPredicted RBP10.09□□□□□ -0.79
VPS50-212ENST00000476413 DSC3Q14574 896 aa10.09□□□□□ -0.79
VPS50-212ENST00000476413 WDR44Q5JSH3 913 aa10.09□□□□□ -0.79
VPS50-212ENST00000476413 DMGDHQ9UI17 866 aaKnown RBP10.09□□□□□ -0.79
VPS50-212ENST00000476413 SOS2Q07890 1332 aaPredicted RBP10.08□□□□□ -0.8
VPS50-212ENST00000476413 GPR182O15218 404 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 P4HBP07237 508 aaKnown RBP10.08□□□□□ -0.8
VPS50-212ENST00000476413 ZAP70P43403 619 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 FMR1Q06787 632 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS50-212ENST00000476413 NBPF1Q3BBV0 1214 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 LYSMD3Q7Z3D4 306 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 TREML1Q86YW5 311 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 GJD3Q8N144 294 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 RHPN1Q8TCX5 695 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 AIDAQ96BJ3 306 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 POLIQ9UNA4 740 aa10.08□□□□□ -0.8
VPS50-212ENST00000476413 ZNF280CQ8ND82 737 aa10.07□□□□□ -0.8
VPS50-212ENST00000476413 EDEM1Q92611 657 aa10.07□□□□□ -0.8
VPS50-212ENST00000476413 TTLL8A6PVC2 850 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 TGFBR3LH3BV60 316 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 PDGFAP04085 211 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 RHOQP17081 205 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 MZF1P28698 734 aaPredicted RBP10.06□□□□□ -0.8
VPS50-212ENST00000476413 AAMPQ13685 434 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 SUSD3Q96L08 255 aa10.06□□□□□ -0.8
VPS50-212ENST00000476413 CTC1Q2NKJ3 1217 aa10.05□□□□□ -0.8
VPS50-212ENST00000476413 IER5Q5VY09 327 aa10.05□□□□□ -0.8
VPS50-212ENST00000476413 CRIPAKQ8N1N5 446 aa10.05□□□□□ -0.8
VPS50-212ENST00000476413 HSH2DQ96JZ2 352 aa10.05□□□□□ -0.8
VPS50-212ENST00000476413 GPC6Q9Y625 555 aaPredicted RBP10.05□□□□□ -0.8
VPS50-212ENST00000476413 OPLAHO14841 1288 aa10.04□□□□□ -0.8
VPS50-212ENST00000476413 MICAL2O94851 1124 aa10.04□□□□□ -0.8
VPS50-212ENST00000476413 DNM1Q05193 864 aaKnown RBP10.04□□□□□ -0.8
VPS50-212ENST00000476413 ALKBH8Q96BT7 664 aaKnown RBP10.04□□□□□ -0.8
VPS50-212ENST00000476413 MRRFQ96E11 262 aaKnown RBP10.04□□□□□ -0.8
VPS50-212ENST00000476413 DMRTB1Q96MA1 342 aa10.04□□□□□ -0.8
VPS50-212ENST00000476413 ZFP42Q96MM3 310 aa10.04□□□□□ -0.8
VPS50-212ENST00000476413 ZIC5Q96T25 663 aa10.04□□□□□ -0.8
VPS50-212ENST00000476413 FIGNL2A6NMB9 653 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 DGAT1O75907 488 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 TATP17735 454 aaPredicted RBP10.03□□□□□ -0.8
VPS50-212ENST00000476413 MSX1P28360 303 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 SCARF1Q14162 830 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 IGSF5Q9NSI5 407 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 DNMT3LQ9UJW3 386 aa10.03□□□□□ -0.8
VPS50-212ENST00000476413 A0A1B0GTH6 734 aa10.02□□□□□ -0.81
VPS50-212ENST00000476413 EHHADHQ08426 723 aa10.02□□□□□ -0.81
VPS50-212ENST00000476413 EAPPQ56P03 285 aaPredicted RBP10.02□□□□□ -0.81
VPS50-212ENST00000476413 GPR152Q8TDT2 470 aa10.02□□□□□ -0.81
VPS50-212ENST00000476413 TIMMDC1Q9NPL8 285 aa10.02□□□□□ -0.81
VPS50-212ENST00000476413 NRG2O14511 850 aaPredicted RBP10.01□□□□□ -0.81
VPS50-212ENST00000476413 PDE3BQ13370 1112 aa10.01□□□□□ -0.81
VPS50-212ENST00000476413 HIF1AQ16665 826 aa10.01□□□□□ -0.81
VPS50-212ENST00000476413 TMC1Q8TDI8 760 aa10.01□□□□□ -0.81
VPS50-212ENST00000476413 NUDT16Q96DE0 195 aaKnown RBP10.01□□□□□ -0.81
VPS50-212ENST00000476413 GGNBP2Q9H3C7 697 aa10.01□□□□□ -0.81
VPS50-212ENST00000476413 GRNP28799 593 aaKnown RBP10□□□□□ -0.81
VPS50-212ENST00000476413 INPP5BP32019 993 aa10□□□□□ -0.81
VPS50-212ENST00000476413 USP5P45974 858 aa10□□□□□ -0.81
VPS50-212ENST00000476413 IDH3AP50213 366 aa10□□□□□ -0.81
VPS50-212ENST00000476413 ZNF326Q5BKZ1 582 aaKnown RBP10□□□□□ -0.81
VPS50-212ENST00000476413 BICDL1Q6ZP65 573 aa10□□□□□ -0.81
VPS50-212ENST00000476413 SENP3-EIF4A1A0A087X0R7 540 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 AXIN1O15169 862 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 GFRA3O60609 400 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 PLCB3Q01970 1234 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 PKDCCQ504Y2 493 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 LRRC69Q6ZNQ3 347 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 BTLAQ7Z6A9 289 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 NIF3L1Q9GZT8 377 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 CRISPLD1Q9H336 500 aa9.99□□□□□ -0.81
VPS50-212ENST00000476413 A0A1W2PNR3 127 aa9.98□□□□□ -0.81
VPS50-212ENST00000476413 A6NHS1 94 aa9.98□□□□□ -0.81
VPS50-212ENST00000476413 ANKIB1Q9P2G1 1089 aa9.98□□□□□ -0.81
VPS50-212ENST00000476413 USP20Q9Y2K6 914 aa9.98□□□□□ -0.81
VPS50-212ENST00000476413 VAMP1P23763 118 aa9.97□□□□□ -0.81
VPS50-212ENST00000476413 ARSJQ5FYB0 599 aaPredicted RBP9.97□□□□□ -0.81
VPS50-212ENST00000476413 SETDB2Q96T68 719 aa9.97□□□□□ -0.81
VPS50-212ENST00000476413 WWC3Q9ULE0 1092 aa9.97□□□□□ -0.81
VPS50-212ENST00000476413 DYRK1BQ9Y463 629 aa9.97□□□□□ -0.81
VPS50-212ENST00000476413 KCNMB2Q9Y691 235 aa9.97□□□□□ -0.81
VPS50-212ENST00000476413 ST8SIA5O15466 376 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 MAPK8P45983 427 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 TYRO3Q06418 890 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 TRIP4Q15650 581 aaPredicted RBP9.96□□□□□ -0.82
VPS50-212ENST00000476413 ENOX2Q16206 610 aaKnown RBP9.96□□□□□ -0.82
VPS50-212ENST00000476413 RUBCNLQ9H714 662 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 GPAMQ9HCL2 828 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms