RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZSCAN31Q96LW9 406 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 USP44Q9H0E7 712 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 KIF2AO00139 706 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-220ENST00000471834 KIF3AQ9Y496 699 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 UQCRHLA0A096LP55 91 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 APBB1O00213 710 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 CLSTN1O94985 981 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 UQCRHP07919 91 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 CAVIN1Q6NZI2 390 aaKnown RBP6.42□□□□□ -1.38
SYNE1-220ENST00000471834 FCHSD1Q86WN1 690 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 DRC7Q8IY82 874 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 RCOR1Q9UKL0 485 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 FLT4P35916 1363 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 ZSCAN22P10073 491 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-220ENST00000471834 MARF1Q9Y4F3 1742 aaKnown RBP6.42□□□□□ -1.38
SYNE1-220ENST00000471834 MYO1BO43795 1136 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 F13A1P00488 732 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 GNAI3P08754 354 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 TTC6Q86TZ1 520 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 ITPRIPQ8IWB1 547 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 DIAPH3Q9NSV4 1193 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 FGD1P98174 961 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 NFAT5O94916 1531 aa6.42□□□□□ -1.38
SYNE1-220ENST00000471834 MMP14P50281 582 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 IQSEC3Q9UPP2 1182 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-220ENST00000471834 CCDC61Q9Y6R9 512 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 NID2Q14112 1375 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 PHF14O94880 888 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 PPP4R3BQ5MIZ7 849 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 VPS53Q5VIR6 699 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 A0A1W2PQ27 194 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 A0A1W2PQ64 194 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 A0A1W2PQD8 194 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 RASEFQ8IZ41 740 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 HNRNPLLQ8WVV9 542 aaKnown RBP6.41□□□□□ -1.38
SYNE1-220ENST00000471834 BCL2L13Q9BXK5 485 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 STK26Q9P289 416 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 PAXBP1Q9Y5B6 917 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 WASLO00401 505 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-220ENST00000471834 PIP4K2BP78356 416 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 NFATC2IPQ8NCF5 419 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 TSPY26PQ9H489 355 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 HYPKQ9NX55 129 aa6.41□□□□□ -1.38
SYNE1-220ENST00000471834 RRP7AQ9Y3A4 280 aaKnown RBP6.41□□□□□ -1.38
SYNE1-220ENST00000471834 SLIT3O75094 1523 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 CCZ1BP86790 482 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 CCZ1P86791 482 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 EMC10Q5UCC4 262 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 NUTM2BA6NNL0 878 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 NUTM2EB1AL46 878 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 HMMRO75330 724 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 KCNJ4P48050 445 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 NUTM2DQ5VT03 806 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 NUTM2AQ8IVF1 878 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 YY1AP1Q9H869 796 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 ATP6V1DQ9Y5K8 247 aa6.4□□□□□ -1.38
SYNE1-220ENST00000471834 DDX19AQ9NUU7 478 aaKnown RBP6.4□□□□□ -1.38
SYNE1-220ENST00000471834 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-220ENST00000471834 METP08581 1390 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 RAB11FIP3O75154 756 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 RUFY3Q7L099 469 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 TMEM139Q8IV31 216 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 KIF18AQ8NI77 898 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 GZF1Q9H116 711 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-220ENST00000471834 TMEM2Q9UHN6 1383 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 GTF2E1P29083 439 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-220ENST00000471834 TUBE1Q9UJT0 475 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 LIMCH1Q9UPQ0 1083 aa6.4□□□□□ -1.39
SYNE1-220ENST00000471834 MEIS3Q99687 375 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 CHMP4AQ9BY43 222 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 CLSTN2Q9H4D0 955 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 MAP2K7O14733 419 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 MSNP26038 577 aaKnown RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 SRPK2P78362 688 aaKnown RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 ARID5BQ14865 1188 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 GGNBP2Q9H3C7 697 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 SCAND2PQ9GZW5 306 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 FOXD4L1Q9NU39 408 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 PYCARDQ9ULZ3 195 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 TRAK1Q9UPV9 953 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 MRVI1Q9Y6F6 885 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 MINK1Q8N4C8 1332 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 SYCE3A1L190 88 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 GOLGA6L6A8MZA4 724 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 ERO1AQ96HE7 468 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 ZNF446Q9NWS9 450 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 PRPF40AO75400 957 aaKnown RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 RBM10P98175 930 aaKnown RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 FHOD1Q9Y613 1164 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 DISP2A7MBM2 1401 aa6.39□□□□□ -1.39
SYNE1-220ENST00000471834 KDM6AO15550 1401 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-220ENST00000471834 ALDH1L1O75891 902 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 HSD3B7Q9H2F3 369 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 RAB21Q9UL25 225 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 SNX14Q9Y5W7 946 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 FANCGO15287 622 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 WDHD1O75717 1129 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 NAA16Q6N069 864 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 AEBP1Q8IUX7 1158 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 LRP10Q7Z4F1 713 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms