RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CDCA7Q9BWT1 371 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-207ENST00000468384 PIK3C2AO00443 1686 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 LAMA3Q16787 3333 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 IQGAP3Q86VI3 1631 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 BTAF1O14981 1849 aa8.13□□□□□ -1.11
HMGB1-207ENST00000468384 TMEM265A0A087WTH1 108 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 GSK3AP49840 483 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 FOSBP53539 338 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 LCE3BQ5TA77 95 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 WAPLQ7Z5K2 1190 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 ADAM33Q9BZ11 813 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 LAMA2P24043 3122 aaKnown RBP8.12□□□□□ -1.11
HMGB1-207ENST00000468384 COL5A2P05997 1499 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-207ENST00000468384 KIAA1551Q9HCM1 1747 aa8.12□□□□□ -1.11
HMGB1-207ENST00000468384 KDM6AO15550 1401 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-207ENST00000468384 SBF1O95248 1867 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 H0YGN5 161 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 EXOC5O00471 708 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 TPRNQ4KMQ1 711 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 FLAD1Q8NFF5 587 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 RRP7BPQ9NSQ0 103 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 SEPT9Q9UHD8 586 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-207ENST00000468384 N4BP2Q86UW6 1770 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-207ENST00000468384 QRICH2Q9H0J4 1663 aa8.11□□□□□ -1.11
HMGB1-207ENST00000468384 PRR20EP86478 221 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 PRR20CP86479 221 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 PRR20DP86480 221 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 PRR20BP86481 221 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 PRR20AP86496 221 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 ZNF326Q5BKZ1 582 aaKnown RBP8.1□□□□□ -1.11
HMGB1-207ENST00000468384 LMO7Q8WWI1 1683 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 LAMB4A4D0S4 1761 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 GPRASP1Q5JY77 1395 aa8.1□□□□□ -1.11
HMGB1-207ENST00000468384 MINK1Q8N4C8 1332 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-207ENST00000468384 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-207ENST00000468384 LMNB1P20700 586 aa8.09□□□□□ -1.11
HMGB1-207ENST00000468384 RASSF7Q02833 373 aa8.09□□□□□ -1.11
HMGB1-207ENST00000468384 ALYREFQ86V81 257 aaKnown RBP8.09□□□□□ -1.11
HMGB1-207ENST00000468384 LAPTM4BQ86VI4 370 aa8.09□□□□□ -1.11
HMGB1-207ENST00000468384 ZFP91Q96JP5 570 aaPredicted RBP8.09□□□□□ -1.11
HMGB1-207ENST00000468384 P2RX7Q99572 595 aaKnown RBP8.09□□□□□ -1.11
HMGB1-207ENST00000468384 KRTAP9-9Q9BYP9 154 aa8.09□□□□□ -1.11
HMGB1-207ENST00000468384 KRTAP9-4Q9BYQ2 154 aa8.09□□□□□ -1.11
HMGB1-207ENST00000468384 ARFGEF1Q9Y6D6 1849 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 CLTCL1P53675 1640 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 SOX1O00570 391 aaPredicted RBP8.08□□□□□ -1.12
HMGB1-207ENST00000468384 TBC1D12O60347 775 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 KCNA3P22001 575 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 CIAPIN1Q6FI81 312 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 TOM1L2Q6ZVM7 507 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 PLPP6Q8IY26 295 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 LRCH3Q96II8 777 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 EEA1Q15075 1411 aa8.08□□□□□ -1.12
HMGB1-207ENST00000468384 RGPD8O14715 1765 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 ACIN1Q9UKV3 1341 aaKnown RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 DALRD3Q5D0E6 543 aaKnown RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 IL21Q9HBE4 155 aa8.07□□□□□ -1.12
HMGB1-207ENST00000468384 TSHZ2Q9NRE2 1034 aa8.07□□□□□ -1.12
HMGB1-207ENST00000468384 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 PIM2Q9P1W9 311 aa8.07□□□□□ -1.12
HMGB1-207ENST00000468384 CCNL1Q9UK58 526 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 ARIH1Q9Y4X5 557 aaPredicted RBP8.07□□□□□ -1.12
HMGB1-207ENST00000468384 CPDO75976 1380 aa8.07□□□□□ -1.12
HMGB1-207ENST00000468384 CACNA1BQ00975 2339 aa8.07□□□□□ -1.12
HMGB1-207ENST00000468384 CENPFP49454 3210 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 GMPRP36959 345 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 SLC19A1P41440 591 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 PKN2Q16513 984 aaKnown RBP8.06□□□□□ -1.12
HMGB1-207ENST00000468384 SPRYD3Q8NCJ5 442 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 ATRXP46100 2492 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 KIF13BQ9NQT8 1826 aa8.06□□□□□ -1.12
HMGB1-207ENST00000468384 MUC6Q6W4X9 2439 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 CNTROBQ8N137 903 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 DEFB123Q8N688 67 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 KIAA1468Q9P260 1216 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 PLEKHH1Q9ULM0 1364 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 BDP1A6H8Y1 2624 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 TRANK1O15050 2925 aa8.05□□□□□ -1.12
HMGB1-207ENST00000468384 BRCA1P38398 1863 aaKnown RBP8.04□□□□□ -1.12
HMGB1-207ENST00000468384 CEP162Q5TB80 1403 aa8.04□□□□□ -1.12
HMGB1-207ENST00000468384 KRTAP4-8A0A0G2JLE6 195 aa8.04□□□□□ -1.12
HMGB1-207ENST00000468384 SNRPBP14678 240 aaKnown RBP8.04□□□□□ -1.12
HMGB1-207ENST00000468384 DDX21Q9NR30 783 aaKnown RBP eCLIP8.04□□□□□ -1.12
HMGB1-207ENST00000468384 USP54Q70EL1 1684 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 MMP10P09238 476 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 NUTM2GQ5VZR2 741 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 SPRYD7Q5W111 196 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 SYMPKQ92797 1274 aaKnown RBP8.03□□□□□ -1.12
HMGB1-207ENST00000468384 MFRPQ9BY79 579 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 PRO3102Q9H379 93 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 TAF1DQ9H5J8 278 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-207ENST00000468384 TLL2Q9Y6L7 1015 aa8.03□□□□□ -1.12
HMGB1-207ENST00000468384 WNK3Q9BYP7 1800 aa8.02□□□□□ -1.13
HMGB1-207ENST00000468384 IQCA1LA6NCM1 817 aa8.02□□□□□ -1.13
HMGB1-207ENST00000468384 GDF9O60383 454 aa8.02□□□□□ -1.13
HMGB1-207ENST00000468384 EAPPQ56P03 285 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-207ENST00000468384 MAP1SQ66K74 1059 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-207ENST00000468384 Q7L0L9 218 aa8.02□□□□□ -1.13
HMGB1-207ENST00000468384 SAGE1Q9NXZ1 904 aa8.02□□□□□ -1.13
HMGB1-207ENST00000468384 ANKRD11Q6UB99 2663 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms