RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SOCS7O14512 581 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 ABL2P42684 1182 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 VAC14Q08AM6 782 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 AGBL1Q96MI9 1066 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 CARD11Q9BXL7 1154 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 NEXMIFQ5QGS0 1516 aa7.68□□□□□ -1.18
VPS41-211ENST00000466017 PPLO60437 1756 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 LILRA1O75019 489 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 NBPF1Q3BBV0 1214 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 LCE2CQ5TA81 110 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 PIK3C2GO75747 1445 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 TRPM1Q7Z4N2 1603 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 MADDQ8WXG6 1647 aa7.67□□□□□ -1.18
VPS41-211ENST00000466017 HSPA5P11021 654 aaKnown RBP7.66□□□□□ -1.18
VPS41-211ENST00000466017 C6orf118Q5T5N4 469 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 MRPL14Q6P1L8 145 aaKnown RBP7.66□□□□□ -1.18
VPS41-211ENST00000466017 ZNF784Q8NCA9 323 aaPredicted RBP7.66□□□□□ -1.18
VPS41-211ENST00000466017 SIRT1Q96EB6 747 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 TRIM47Q96LD4 638 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 ROCK2O75116 1388 aaKnown RBP7.66□□□□□ -1.18
VPS41-211ENST00000466017 TMEM2Q9UHN6 1383 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 ARHGAP23Q9P227 1491 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 SETBP1Q9Y6X0 1596 aa7.66□□□□□ -1.18
VPS41-211ENST00000466017 SLIT1O75093 1534 aa7.65□□□□□ -1.18
VPS41-211ENST00000466017 PTPRMP28827 1452 aa7.65□□□□□ -1.18
VPS41-211ENST00000466017 CFAP70Q5T0N1 1121 aa7.65□□□□□ -1.18
VPS41-211ENST00000466017 RIMS2Q9UQ26 1411 aa7.65□□□□□ -1.18
VPS41-211ENST00000466017 USP47Q96K76 1375 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 SCTRP47872 440 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 Q6ZVU0 165 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 MEIOBQ8N635 442 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 CLUAP1Q96AJ1 413 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 PUS7Q96PZ0 661 aaKnown RBP7.64□□□□□ -1.19
VPS41-211ENST00000466017 CDCA7Q9BWT1 371 aaPredicted RBP7.64□□□□□ -1.19
VPS41-211ENST00000466017 TBX22Q9Y458 520 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 EID1Q9Y6B2 187 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 UBR1Q8IWV7 1749 aa7.64□□□□□ -1.19
VPS41-211ENST00000466017 RIMS1Q86UR5 1692 aaKnown RBP7.63□□□□□ -1.19
VPS41-211ENST00000466017 SCAF11Q99590 1463 aaKnown RBP7.63□□□□□ -1.19
VPS41-211ENST00000466017 PLEKHG1Q9ULL1 1385 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 ST20-MTHFSA0A0A6YYL1 179 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 PNMA1Q8ND90 353 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 CCDC85AQ96PX6 553 aaPredicted RBP7.63□□□□□ -1.19
VPS41-211ENST00000466017 CYLDQ9NQC7 956 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 CEP126Q9P2H0 1117 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 EMILIN1Q9Y6C2 1016 aa7.63□□□□□ -1.19
VPS41-211ENST00000466017 SBNO2Q9Y2G9 1366 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 MYO5BQ9ULV0 1848 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 POM121CA8CG34 1229 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 TXNDC2Q86VQ3 553 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 LINC00528Q8N1L1 170 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 PHTF2Q8N3S3 785 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 ZNF395Q9H8N7 513 aaPredicted RBP7.62□□□□□ -1.19
VPS41-211ENST00000466017 ADGRB1O14514 1584 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 MED14O60244 1454 aa7.62□□□□□ -1.19
VPS41-211ENST00000466017 EIF3AQ14152 1382 aaKnown RBP7.61□□□□□ -1.19
VPS41-211ENST00000466017 ABCC11Q96J66 1382 aa7.61□□□□□ -1.19
VPS41-211ENST00000466017 LTKP29376 864 aa7.61□□□□□ -1.19
VPS41-211ENST00000466017 LCE2AQ5TA79 106 aaPredicted RBP7.61□□□□□ -1.19
VPS41-211ENST00000466017 ANKLE2Q86XL3 938 aa7.61□□□□□ -1.19
VPS41-211ENST00000466017 ADAMTS19Q8TE59 1207 aa7.61□□□□□ -1.19
VPS41-211ENST00000466017 TESK2Q96S53 571 aa7.61□□□□□ -1.19
VPS41-211ENST00000466017 CDV3Q9UKY7 258 aaKnown RBP7.61□□□□□ -1.19
VPS41-211ENST00000466017 PIK3R4Q99570 1358 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 ALKQ9UM73 1620 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 CEP170BQ9Y4F5 1589 aaPredicted RBP7.6□□□□□ -1.19
VPS41-211ENST00000466017 STAU1O95793 577 aaKnown RBP7.6□□□□□ -1.19
VPS41-211ENST00000466017 VEGFBP49765 207 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 RELBQ01201 579 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 NBPF20Q3BBV1 942 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 CDCA8Q53HL2 280 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 ZNF142P52746 1687 aaPredicted RBP7.6□□□□□ -1.19
VPS41-211ENST00000466017 MYO3AQ8NEV4 1616 aa7.6□□□□□ -1.19
VPS41-211ENST00000466017 LRPPRCP42704 1394 aaKnown RBP7.59□□□□□ -1.19
VPS41-211ENST00000466017 WASHC2AQ641Q2 1341 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 FIGNL2A6NMB9 653 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 PIK3CDO00329 1044 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 BMP2P12643 396 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 CTSOP43234 321 aaPredicted RBP7.59□□□□□ -1.19
VPS41-211ENST00000466017 TMF1P82094 1093 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 DIEXFQ68CQ4 756 aaKnown RBP7.59□□□□□ -1.19
VPS41-211ENST00000466017 DNMT3LQ9UJW3 386 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 IQGAP1P46940 1657 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 ADAMTS13Q76LX8 1427 aa7.59□□□□□ -1.19
VPS41-211ENST00000466017 CCDC7Q96M83 1385 aa7.59□□□□□ -1.2
VPS41-211ENST00000466017 DLC1Q96QB1 1528 aa7.58□□□□□ -1.2
VPS41-211ENST00000466017 SOS2Q07890 1332 aaPredicted RBP7.58□□□□□ -1.2
VPS41-211ENST00000466017 TMEM132EQ6IEE7 984 aa7.58□□□□□ -1.2
VPS41-211ENST00000466017 INSM2Q96T92 566 aaPredicted RBP7.58□□□□□ -1.2
VPS41-211ENST00000466017 PGPEP1Q9NXJ5 209 aa7.58□□□□□ -1.2
VPS41-211ENST00000466017 TECPR2O15040 1411 aa7.58□□□□□ -1.2
VPS41-211ENST00000466017 YTHDC2Q9H6S0 1430 aaKnown RBP7.58□□□□□ -1.2
VPS41-211ENST00000466017 CENPJQ9HC77 1338 aaPredicted RBP7.57□□□□□ -1.2
VPS41-211ENST00000466017 NRXN3Q9Y4C0 1643 aa7.57□□□□□ -1.2
VPS41-211ENST00000466017 NFX1Q12986 1120 aaKnown RBP7.57□□□□□ -1.2
VPS41-211ENST00000466017 HIRIP3Q9BW71 556 aaPredicted RBP7.57□□□□□ -1.2
VPS41-211ENST00000466017 SENP2Q9HC62 589 aa7.57□□□□□ -1.2
VPS41-211ENST00000466017 TRAK1Q9UPV9 953 aa7.57□□□□□ -1.2
VPS41-211ENST00000466017 PCDHB11Q9Y5F2 797 aa7.57□□□□□ -1.2
VPS41-211ENST00000466017 FAM135BQ49AJ0 1406 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms