RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	SALL2	Q9Y467	1007 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-208	ENST00000459947	KIF13B	Q9NQT8	1826 aa		13.73	□□□□□ -0.21
UBR4-208	ENST00000459947	SLFN5	Q08AF3	891 aa		13.73	□□□□□ -0.21
UBR4-208	ENST00000459947	FKBP8	Q14318	412 aa		13.73	□□□□□ -0.21
UBR4-208	ENST00000459947	RIC1	Q4ADV7	1423 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	MYL6B	P14649	208 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	ST5	P78524	1137 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	PLBD2	Q8NHP8	589 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	NFIX	Q14938	502 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	C8orf58	Q8NAV2	365 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	TSR2	Q969E8	191 aa	Known RBP	13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	CHPF2	Q9P2E5	772 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	PDIA6	Q15084	440 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	ZBED9	Q6R2W3	1325 aa		13.72	□□□□□ -0.21
UBR4-208	ENST00000459947	POLRMT	O00411	1230 aa	Known RBP	13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	PPP1R42	Q7Z4L9	355 aa		13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	BCL2L12	Q9HB09	334 aa		13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	EP400	Q96L91	3159 aa		13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	ANKRD36C	Q5JPF3	1778 aa		13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	SERPINB2	P05120	415 aa		13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	EXOSC9	Q06265	439 aa	Known RBP	13.71	□□□□□ -0.21
UBR4-208	ENST00000459947	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.71	□□□□□ -0.22
UBR4-208	ENST00000459947	XAGE3	Q8WTP9	111 aa		13.71	□□□□□ -0.22
UBR4-208	ENST00000459947	NPHP1	O15259	732 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	TPTE2	Q6XPS3	522 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	COPS6	Q7L5N1	327 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	PDE6B	P35913	854 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	LRP10	Q7Z4F1	713 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	NUP98	P52948	1817 aa		13.7	□□□□□ -0.22
UBR4-208	ENST00000459947	ANKRD13D	Q6ZTN6	518 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	CNBD1	Q8NA66	436 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	ALDH1L2	Q3SY69	923 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	TRMT2A	Q8IZ69	625 aa	Known RBP	13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	SYT17	Q9BSW7	474 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	VAMP4	O75379	141 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	DDR1	Q08345	913 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	KRT24	Q2M2I5	525 aa		13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.69	□□□□□ -0.22
UBR4-208	ENST00000459947	TBC1D9B	Q66K14	1250 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	NEXN	Q0ZGT2	675 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	TCIRG1	Q13488	830 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	TRIM28	Q13263	835 aa	Known RBP	13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	TTLL7	Q6ZT98	887 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	ZNF34	Q8IZ26	560 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	BRIP1	Q9BX63	1249 aa		13.68	□□□□□ -0.22
UBR4-208	ENST00000459947	RIC3	Q7Z5B4	369 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	KLHL34	Q8N239	644 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	ELL2	O00472	640 aa	Predicted RBP	13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	SMIM5	Q71RC9	77 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	NECTIN2	Q92692	538 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	AFDN	P55196	1824 aa	Known RBP	13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	PXDNL	A1KZ92	1463 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	GTF2E1	P29083	439 aa	Predicted RBP	13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	ZBTB3	Q9H5J0	574 aa		13.67	□□□□□ -0.22
UBR4-208	ENST00000459947	GRIN3B	O60391	1043 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	PIP4K2A	P48426	406 aa	Predicted RBP	13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	PROSER3	Q2NL68	480 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	KSR2	Q6VAB6	950 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	TSPYL6	Q8N831	410 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	AIMP1	Q12904	312 aa	Known RBP	13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	BICDL1	Q6ZP65	573 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	UTP14A	Q9BVJ6	771 aa	Known RBP	13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	ARFGEF2	Q9Y6D5	1785 aa		13.66	□□□□□ -0.22
UBR4-208	ENST00000459947	PTPRC	P08575	1304 aa		13.65	□□□□□ -0.22
UBR4-208	ENST00000459947	SLC4A2	P04920	1241 aa		13.65	□□□□□ -0.22
UBR4-208	ENST00000459947		H0YIN7	160 aa		13.65	□□□□□ -0.23
UBR4-208	ENST00000459947	PRR5L	Q6MZQ0	368 aa		13.65	□□□□□ -0.23
UBR4-208	ENST00000459947	ISCA1	Q9BUE6	129 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	METTL22	Q9BUU2	404 aa	Predicted RBP	13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	DLEC1	Q9Y238	1755 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	FLII	Q13045	1269 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	HLF	Q16534	295 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	CCDC191	Q8NCU4	936 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	BRPF1	P55201	1214 aa	Predicted RBP	13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	SOGA3	Q5TF21	947 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	STYK1	Q6J9G0	422 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	CNKSR1	Q969H4	720 aa		13.64	□□□□□ -0.23
UBR4-208	ENST00000459947	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.63	□□□□□ -0.23
UBR4-208	ENST00000459947	ANXA1	P04083	346 aa		13.63	□□□□□ -0.23
UBR4-208	ENST00000459947	PIM2	Q9P1W9	311 aa		13.63	□□□□□ -0.23
UBR4-208	ENST00000459947	KIF16B	Q96L93	1317 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	FKBP5	Q13451	457 aa	Predicted RBP	13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	GRIPAP1	Q4V328	841 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	SLC10A5	Q5PT55	438 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	SH3TC1	Q8TE82	1336 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	KIAA1551	Q9HCM1	1747 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	NLRP10	Q86W26	655 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	C2CD5	Q86YS7	1000 aa		13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	CWC25	Q9NXE8	425 aa	Predicted RBP	13.62	□□□□□ -0.23
UBR4-208	ENST00000459947	DNAAF4	Q8WXU2	420 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	NTSR2	O95665	410 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	NPR1	P16066	1061 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	MASTL	Q96GX5	879 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	API5	Q9BZZ5	524 aa	Known RBP	13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	HDAC5	Q9UQL6	1122 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	KLRG2	A4D1S0	409 aa	Predicted RBP	13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	IPO8	O15397	1037 aa	Known RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms