RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 SPG7Q9UQ90 795 aa10.66□□□□□ -0.7
HDAC3-202ENST00000459727 SIPA1L3O60292 1781 aaPredicted RBP10.66□□□□□ -0.7
HDAC3-202ENST00000459727 SETD1BQ9UPS6 1966 aaKnown RBP10.66□□□□□ -0.7
HDAC3-202ENST00000459727 GRM8O00222 908 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 PSMA5P28066 241 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 ANKRD1Q15327 319 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 RNF20Q5VTR2 975 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 LRSAM1Q6UWE0 723 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 ZGPATQ8N5A5 531 aaKnown RBP10.65□□□□□ -0.7
HDAC3-202ENST00000459727 RAPGEF4Q8WZA2 1011 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 IL1RAPL2Q9NP60 686 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 MRC1P22897 1456 aa10.65□□□□□ -0.7
HDAC3-202ENST00000459727 ERBB3P21860 1342 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 ERBB4Q15303 1308 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 C1orf167Q5SNV9 1468 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 PXDNQ92626 1479 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 PRPF40AO75400 957 aaKnown RBP10.64□□□□□ -0.71
HDAC3-202ENST00000459727 NBPF7P0C2Y1 421 aaPredicted RBP10.64□□□□□ -0.71
HDAC3-202ENST00000459727 G3BP1Q13283 466 aaKnown RBP eCLIP10.64□□□□□ -0.71
HDAC3-202ENST00000459727 VPS53Q5VIR6 699 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 ZSCAN30Q86W11 494 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 GAS2L3Q86XJ1 694 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 KCNB2Q92953 911 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 ARXQ96QS3 562 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 C19orf44Q9H6X5 657 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 LGR6Q9HBX8 967 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 RRAGDQ9NQL2 400 aaPredicted RBP10.64□□□□□ -0.71
HDAC3-202ENST00000459727 SNRKQ9NRH2 765 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 MAP3K2Q9Y2U5 619 aa10.64□□□□□ -0.71
HDAC3-202ENST00000459727 AK9Q5TCS8 1911 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 TATP17735 454 aaPredicted RBP10.63□□□□□ -0.71
HDAC3-202ENST00000459727 PDCP20941 246 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 MSNP26038 577 aaKnown RBP10.63□□□□□ -0.71
HDAC3-202ENST00000459727 MPRIPQ6WCQ1 1025 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 KRT28Q7Z3Y7 464 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 NUTM1Q86Y26 1132 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 LSG1Q9H089 658 aaKnown RBP10.63□□□□□ -0.71
HDAC3-202ENST00000459727 HMG20BQ9P0W2 317 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 ZDHHC9Q9Y397 364 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 ALS2Q96Q42 1657 aa10.63□□□□□ -0.71
HDAC3-202ENST00000459727 UVSSAQ2YD98 709 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 TSHZ3Q63HK5 1081 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 CHMP4CQ96CF2 233 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 TTC14Q96N46 770 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 PALD1Q9ULE6 856 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 SMC3Q9UQE7 1217 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 SNX14Q9Y5W7 946 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 CYP46A1Q9Y6A2 500 aa10.62□□□□□ -0.71
HDAC3-202ENST00000459727 PARP4Q9UKK3 1724 aaKnown RBP10.61□□□□□ -0.71
HDAC3-202ENST00000459727 NPHP3Q7Z494 1330 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 ZBTB7CA1YPR0 619 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 ZSCAN22P10073 491 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-202ENST00000459727 TERF1P54274 439 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 KRT32Q14532 448 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 ZNF790Q6PG37 636 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-202ENST00000459727 RIC3Q7Z5B4 369 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 UNC5CLQ8IV45 518 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 DCAF5Q96JK2 942 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 PDLIM2Q96JY6 352 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 ALDH8A1Q9H2A2 487 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-202ENST00000459727 SLC52A2Q9HAB3 445 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 CCDC39Q9UFE4 941 aa10.61□□□□□ -0.71
HDAC3-202ENST00000459727 CCDC171Q6TFL3 1326 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 TPM2P07951 284 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 SNRPA1P09661 255 aaKnown RBP10.6□□□□□ -0.71
HDAC3-202ENST00000459727 UBE2HP62256 183 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 PKP1Q13835 747 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 CCDC183Q5T5S1 534 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 AACSQ86V21 672 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 PROSER2Q86WR7 435 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-202ENST00000459727 IFNL2Q8IZJ0 200 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 TTC5Q8N0Z6 440 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 GPT2Q8TD30 523 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 LRRC59Q96AG4 307 aaKnown RBP10.6□□□□□ -0.71
HDAC3-202ENST00000459727 METTL22Q9BUU2 404 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-202ENST00000459727 TSPY26PQ9H489 355 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 ZSWIM6Q9HCJ5 1215 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 PDRG1Q9NUG6 133 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 SCN11AQ9UI33 1791 aa10.6□□□□□ -0.71
HDAC3-202ENST00000459727 ATF3P18847 181 aa10.59□□□□□ -0.71
HDAC3-202ENST00000459727 KCNJ4P48050 445 aa10.59□□□□□ -0.71
HDAC3-202ENST00000459727 CWC27Q6UX04 472 aaKnown RBP10.59□□□□□ -0.71
HDAC3-202ENST00000459727 FMNL2Q96PY5 1086 aa10.59□□□□□ -0.71
HDAC3-202ENST00000459727 UPF3BQ9BZI7 483 aaKnown RBP10.59□□□□□ -0.71
HDAC3-202ENST00000459727 CPDO75976 1380 aa10.59□□□□□ -0.71
HDAC3-202ENST00000459727 TNS3Q68CZ2 1445 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 PKD1L3Q7Z443 1732 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 RGPD2P0DJD1 1756 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 RPAP1Q9BWH6 1393 aaPredicted RBP10.58□□□□□ -0.72
HDAC3-202ENST00000459727 JCADQ9P266 1359 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 KCNQ3O43525 872 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 STX6O43752 255 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 PHKG2P15735 406 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 CASTP20810 708 aaKnown RBP10.58□□□□□ -0.72
HDAC3-202ENST00000459727 AK2P54819 239 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 TSGA10IPQ3SY00 556 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 LMOD2Q6P5Q4 547 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 RUFY3Q7L099 469 aa10.58□□□□□ -0.72
HDAC3-202ENST00000459727 CADPS2Q86UW7 1296 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms