RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 JDP2Q8WYK2 163 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 NYXQ9GZU5 481 aa9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 DBF4Q9UBU7 674 aaPredicted RBP9.2□□□□□ -0.94
CDC42BPA-208ENST00000442054 USP54Q70EL1 1684 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 KCNQ3O43525 872 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 SLC4A2P04920 1241 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 DDX46Q7L014 1031 aaKnown RBP9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 COPS6Q7L5N1 327 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 BCL2L13Q9BXK5 485 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 LRRC4BQ9NT99 713 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 DALRD3Q5D0E6 543 aaKnown RBP9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 PIM2Q9P1W9 311 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 COL14A1Q05707 1796 aaKnown RBP9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 PDE6BP35913 854 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 HDAC1Q13547 482 aaPredicted RBP9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 ZNF827Q17R98 1081 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 LINC00116Q8NCU8 138 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 HDAC5Q9UQL6 1122 aa9.19□□□□□ -0.94
CDC42BPA-208ENST00000442054 ATP5J2-PTCD1G3V325 749 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 C6orf229H3BNL8 230 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 ITPK1Q13572 414 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 DPY19L2Q6NUT2 758 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 XAGE3Q8WTP9 111 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 SYT17Q9BSW7 474 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 NHSL1Q5SYE7 1610 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 GSE1Q14687 1217 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 MVPQ14764 893 aaKnown RBP9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 A0A0G2JLW4 131 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 VPS37DQ86XT2 251 aa9.18□□□□□ -0.94
CDC42BPA-208ENST00000442054 IPO8O15397 1037 aaKnown RBP9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 MEGF6O75095 1541 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 IL6STP40189 918 aaPredicted RBP9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 ANKRD13DQ6ZTN6 518 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 MPHOSPH8Q99549 860 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 MYD88Q99836 296 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 PDGFDQ9GZP0 370 aaPredicted RBP9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 HYPKQ9NX55 129 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 LRRC37A3O60309 1634 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 NKX1-1Q15270 411 aaPredicted RBP9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 GORABQ5T7V8 394 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 UBE2Q2Q8WVN8 375 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 GPBP1L1Q9HC44 474 aaPredicted RBP9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 PDZRN3Q9UPQ7 1066 aa9.17□□□□□ -0.94
CDC42BPA-208ENST00000442054 SMC5Q8IY18 1101 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 UTP14AQ9BVJ6 771 aaKnown RBP9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 EXOSC9Q06265 439 aaKnown RBP9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 CNKSR1Q969H4 720 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 ANKIB1Q9P2G1 1089 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 XIRP1Q702N8 1843 aaKnown RBP9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 TRIM27P14373 513 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 RC3H1Q5TC82 1133 aaKnown RBP9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 VSIG10Q8N0Z9 540 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 CFAP44Q96MT7 982 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 ZBTB40Q9NUA8 1239 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 NARFQ9UHQ1 456 aa9.16□□□□□ -0.94
CDC42BPA-208ENST00000442054 RGS3P49796 1198 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 GRM1Q13255 1194 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 PROM2Q8N271 834 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 PIAS4Q8N2W9 510 aaPredicted RBP9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 TTLL6Q8N841 843 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 ZNF853P0CG23 659 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 NUTM1Q86Y26 1132 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 CHPF2Q9P2E5 772 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 GJA3Q9Y6H8 435 aa9.15□□□□□ -0.94
CDC42BPA-208ENST00000442054 IFT57Q9NWB7 429 aa9.15□□□□□ -0.95
CDC42BPA-208ENST00000442054 SSH1Q8WYL5 1049 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 RNF181Q9P0P0 153 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 CYP19A1P11511 503 aaPredicted RBP9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 ALDH1B1P30837 517 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 IGHMBP2P38935 993 aaKnown RBP9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 KRT24Q2M2I5 525 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 KIF2CQ99661 725 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 TBC1D2Q9BYX2 928 aa9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 NSFL1CQ9UNZ2 370 aaKnown RBP9.14□□□□□ -0.95
CDC42BPA-208ENST00000442054 LMOD1P29536 600 aaPredicted RBP9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 CHRNA5P30532 468 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 PARP10Q53GL7 1025 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 CNNM1Q9NRU3 951 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 NFIXQ14938 502 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 LARGE2Q8N3Y3 721 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 JARID2Q92833 1246 aaPredicted RBP9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 MBIPQ9NS73 344 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 HEG1Q9ULI3 1381 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 PNPLA7Q6ZV29 1317 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 GIGYF1O75420 1035 aaPredicted RBP9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 TPRNQ4KMQ1 711 aa9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 RBM17Q96I25 401 aaKnown RBP9.13□□□□□ -0.95
CDC42BPA-208ENST00000442054 HCLS1P14317 486 aaPredicted RBP9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 EIF6P56537 245 aaKnown RBP9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 EIF4A1P60842 406 aaKnown RBP9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 DDX21Q9NR30 783 aaKnown RBP eCLIP9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 PRAMEF22A3QJZ6 481 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 C21orf2O43822 256 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 DPEP1P16444 411 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 EAPPQ56P03 285 aaPredicted RBP9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 BRPF3Q9ULD4 1205 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 CD2APQ9Y5K6 639 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 FSD2A1L4K1 749 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 CCDC57Q2TAC2 916 aa9.12□□□□□ -0.95
CDC42BPA-208ENST00000442054 TTLL7Q6ZT98 887 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms