RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 KAT6BQ8WYB5 2073 aa10.46□□□□□ -0.74
HPS4-206ENST00000439453 DIAPH1O60610 1272 aaKnown RBP10.46□□□□□ -0.74
HPS4-206ENST00000439453 CWC22Q9HCG8 908 aaKnown RBP10.46□□□□□ -0.74
HPS4-206ENST00000439453 SRCAPQ6ZRS2 3230 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 KCNQ2O43526 872 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 LRSAM1Q6UWE0 723 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 TRIM37O94972 964 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
HPS4-206ENST00000439453 NKX1-1Q15270 411 aaPredicted RBP10.45□□□□□ -0.74
HPS4-206ENST00000439453 SULT6B1Q6IMI4 303 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 SIRT2Q8IXJ6 389 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 ARID3AQ99856 593 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 TJP1Q07157 1748 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 CASZ1Q86V15 1759 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 GSPT1P15170 499 aaKnown RBP10.45□□□□□ -0.74
HPS4-206ENST00000439453 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.45□□□□□ -0.742e-7■□□□□ 11.1
HPS4-206ENST00000439453 PODXL2Q9NZ53 605 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 PCDH11XQ9BZA7 1347 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 PCDH11YQ9BZA8 1340 aa10.45□□□□□ -0.74
HPS4-206ENST00000439453 TATP17735 454 aaPredicted RBP10.44□□□□□ -0.74
HPS4-206ENST00000439453 DEFB132Q7Z7B7 95 aa10.44□□□□□ -0.74
HPS4-206ENST00000439453 RAPGEF4Q8WZA2 1011 aa10.44□□□□□ -0.74
HPS4-206ENST00000439453 CFAP44Q96MT7 982 aa10.44□□□□□ -0.74
HPS4-206ENST00000439453 USP26Q9BXU7 913 aa10.44□□□□□ -0.74
HPS4-206ENST00000439453 TMEM63CQ9P1W3 806 aa10.44□□□□□ -0.74
HPS4-206ENST00000439453 SYCE3A1L190 88 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 HMOX1P09601 288 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 PHKG2P15735 406 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 CCDC125Q86Z20 511 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 ZGPATQ8N5A5 531 aaKnown RBP10.43□□□□□ -0.74
HPS4-206ENST00000439453 ZNF428Q96B54 188 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 CAMKK2Q96RR4 588 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 ZDHHC9Q9Y397 364 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 KDM3BQ7LBC6 1761 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 COL24A1Q17RW2 1714 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 PLEKHM2Q8IWE5 1019 aa10.43□□□□□ -0.74
HPS4-206ENST00000439453 MRPL50Q8N5N7 158 aaKnown RBP10.42□□□□□ -0.74
HPS4-206ENST00000439453 DDX54Q8TDD1 881 aaKnown RBP10.42□□□□□ -0.74
HPS4-206ENST00000439453 ARHGAP45Q92619 1136 aa10.42□□□□□ -0.74
HPS4-206ENST00000439453 BCL11BQ9C0K0 894 aaPredicted RBP10.42□□□□□ -0.74
HPS4-206ENST00000439453 PROM2Q8N271 834 aa10.42□□□□□ -0.74
HPS4-206ENST00000439453 ACSBG1Q96GR2 724 aa10.42□□□□□ -0.74
HPS4-206ENST00000439453 NSFL1CQ9UNZ2 370 aaKnown RBP10.42□□□□□ -0.74
HPS4-206ENST00000439453 UBR3Q6ZT12 1888 aa10.42□□□□□ -0.74
HPS4-206ENST00000439453 ST18O60284 1047 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 TTC22Q5TAA0 569 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 CCDC94Q9BW85 323 aaPredicted RBP10.41□□□□□ -0.74
HPS4-206ENST00000439453 PRDM10Q9NQV6 1147 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 PHACTR3Q96KR7 559 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 INTS3Q68E01 1043 aaKnown RBP10.41□□□□□ -0.74
HPS4-206ENST00000439453 RNF214Q8ND24 703 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 CHAMP1Q96JM3 812 aa10.41□□□□□ -0.74
HPS4-206ENST00000439453 VAMP4O75379 141 aa10.4□□□□□ -0.74
HPS4-206ENST00000439453 PTMAP06454 111 aaKnown RBP10.4□□□□□ -0.74
HPS4-206ENST00000439453 KIAA2012Q0VF49 1180 aa10.4□□□□□ -0.74
HPS4-206ENST00000439453 MTHFSDQ2M296 383 aaKnown RBP10.4□□□□□ -0.74
HPS4-206ENST00000439453 KCPQ6ZWJ8 1503 aa10.4□□□□□ -0.74
HPS4-206ENST00000439453 EN1Q05925 392 aaPredicted RBP10.4□□□□□ -0.74
HPS4-206ENST00000439453 ABCC4O15439 1325 aa10.4□□□□□ -0.74
HPS4-206ENST00000439453 MBD3O95983 291 aa10.4□□□□□ -0.74
HPS4-206ENST00000439453 EZH2Q15910 746 aaKnown RBP10.4□□□□□ -0.74
HPS4-206ENST00000439453 MYH14Q7Z406 1995 aaKnown RBP10.4□□□□□ -0.75
HPS4-206ENST00000439453 MYRIPQ8NFW9 859 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 SPG7Q9UQ90 795 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.39□□□□□ -0.75
HPS4-206ENST00000439453 C4BP0C0L5 1744 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 UTP14CQ5TAP6 766 aaKnown RBP10.39□□□□□ -0.75
HPS4-206ENST00000439453 PLSCR1O15162 318 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 DMTNQ08495 405 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 TSPY26PQ9H489 355 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 DCTPP1Q9H773 170 aa10.39□□□□□ -0.75
HPS4-206ENST00000439453 FOXD4L5Q5VV16 416 aaPredicted RBP10.38□□□□□ -0.75
HPS4-206ENST00000439453 C16orf71Q8IYS4 520 aaPredicted RBP10.38□□□□□ -0.75
HPS4-206ENST00000439453 TSPYL6Q8N831 410 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 FOXD4L4Q8WXT5 416 aaPredicted RBP10.38□□□□□ -0.75
HPS4-206ENST00000439453 ZHX1Q9UKY1 873 aaPredicted RBP10.38□□□□□ -0.75
HPS4-206ENST00000439453 PRKAR2BP31323 418 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 AMOTQ4VCS5 1084 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 IFNL2Q8IZJ0 200 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 CEMIPQ8WUJ3 1361 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 APBA3O96018 575 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 DNTTIP2Q5QJE6 756 aaKnown RBP10.38□□□□□ -0.75
HPS4-206ENST00000439453 CASC1Q6TDU7 716 aa10.38□□□□□ -0.75
HPS4-206ENST00000439453 C4AP0C0L4 1744 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 FCHSD2O94868 740 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 ZNF530Q6P9A1 599 aaPredicted RBP10.37□□□□□ -0.75
HPS4-206ENST00000439453 SDSP20132 328 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 PLEKHO1Q53GL0 409 aaPredicted RBP10.37□□□□□ -0.75
HPS4-206ENST00000439453 PIGBQ92521 554 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 PRIMPOLQ96LW4 560 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 LRRC4BQ9NT99 713 aa10.37□□□□□ -0.75
HPS4-206ENST00000439453 LAMB4A4D0S4 1761 aa10.36□□□□□ -0.75
HPS4-206ENST00000439453 ELL2O00472 640 aaPredicted RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 ZSCAN20P17040 1043 aaPredicted RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 AKAP4Q5JQC9 854 aa10.36□□□□□ -0.75
HPS4-206ENST00000439453 OTUD7AQ8TE49 926 aaPredicted RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 JARID2Q92833 1246 aaPredicted RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 LGR6Q9HBX8 967 aa10.36□□□□□ -0.75
HPS4-206ENST00000439453 MAP3K5Q99683 1374 aa10.36□□□□□ -0.75
HPS4-206ENST00000439453 REC8O95072 547 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms