RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ASXL1Q8IXJ9 1541 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 TNNT1P13805 278 aa13.97□□□□□ -0.17
CCDC88A-207ENST00000436346 C16orf71Q8IYS4 520 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 DENND4BO75064 1496 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 SYCP3Q8IZU3 236 aa13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 MAST1Q9Y2H9 1570 aa13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 DNA2P51530 1060 aa13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC83Q8IWF9 413 aa13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 SPTY2D1Q68D10 685 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 BICD1Q96G01 975 aa13.96□□□□□ -0.17
CCDC88A-207ENST00000436346 CCDC66A2RUB6 948 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC113Q9H0I3 377 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 COMMD10Q9Y6G5 202 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 NCOA1Q15788 1441 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 ABCC1P33527 1531 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC12Q8WUD4 166 aaPredicted RBP13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC102AQ96A19 550 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 AMOTL2Q9Y2J4 779 aa13.96□□□□□ -0.18
CCDC88A-207ENST00000436346 CTNNA2P26232 953 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 UBE3BQ7Z3V4 1068 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 DYDC1Q8WWB3 177 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 USP8P40818 1118 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 PLS1Q14651 629 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 C8orf37Q96NL8 207 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 GSTTP1A0A1W2PQM5 241 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 PUF60Q9UHX1 559 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 ZNF213O14771 459 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 PRKCSHP14314 528 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 DMRT2Q9Y5R5 561 aa13.95□□□□□ -0.18
CCDC88A-207ENST00000436346 SCAF11Q99590 1463 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 HMGB1P09429 215 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 PHF8Q9UPP1 1060 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 IFIT3O14879 490 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 BICRAQ9NZM4 1560 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 FERMT3Q86UX7 667 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 LUZP1Q86V48 1076 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 DNAAF4Q8WXU2 420 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 ABCC11Q96J66 1382 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 PPP1R42Q7Z4L9 355 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 BAG4O95429 457 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 MFSD6Q6ZSS7 791 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 PRXQ9BXM0 1461 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 PDIA4P13667 645 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 FILIP1Q7Z7B0 1213 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 HOOK3Q86VS8 718 aa13.94□□□□□ -0.18
CCDC88A-207ENST00000436346 F6X3S4 739 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 CASQ1P31415 396 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 CCT2P78371 535 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 GOLIM4O00461 696 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 SFPQP23246 707 aaKnown RBP eCLIP13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 CETN1Q12798 172 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 NBPF8Q3BBV2 869 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 VTI1AQ96AJ9 217 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 NLRP5P59047 1200 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 PLCD3Q8N3E9 789 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 SH2B1Q9NRF2 756 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 DBF4Q9UBU7 674 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 WASLO00401 505 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 TTC16Q8NEE8 873 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 GSTO1P78417 241 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 MICU3Q86XE3 530 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 INCENPQ9NQS7 918 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 RALGAPBQ86X10 1494 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 ATP6V1AP38606 617 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 CALML4Q96GE6 196 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 VAT1LQ9HCJ6 419 aa13.93□□□□□ -0.18
CCDC88A-207ENST00000436346 PTPRCP08575 1304 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 SYNCQ9H7C4 482 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 TMEM67Q5HYA8 995 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 CKAP2LQ8IYA6 745 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 KAT14Q9H8E8 782 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 TTC21AQ8NDW8 1320 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 GUCY1B3Q02153 619 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC152Q4G0S7 254 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 KIF5CO60282 957 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 PPIP5K1Q6PFW1 1433 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 GRPEL1Q9HAV7 217 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 ALDH1L2Q3SY69 923 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 SSH1Q8WYL5 1049 aa13.92□□□□□ -0.18
CCDC88A-207ENST00000436346 UQCRHLA0A096LP55 91 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 GOLGA8AA7E2F4 631 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 UQCRHP07919 91 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 RBM10P98175 930 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 PIK3R4Q99570 1358 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 MRPS9P82933 396 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC8Q9H0W5 538 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 KIAA0556O60303 1618 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 BRPF3Q9ULD4 1205 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 WDR7Q9Y4E6 1490 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 TSPY2A6NKD2 308 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 ATP5J2-PTCD1G3V325 749 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 IFFO1Q0D2I5 559 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 EMILIN1Q9Y6C2 1016 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 ACSBG1Q96GR2 724 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 WDR70Q9NW82 654 aa13.91□□□□□ -0.18
CCDC88A-207ENST00000436346 CEBPAP49715 358 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 ABCA5Q8WWZ7 1642 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 GOLGA6L10A0A0M3HER8 536 aa13.9□□□□□ -0.18
CCDC88A-207ENST00000436346 CCDC183Q5T5S1 534 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms