RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 C21orf2O43822 256 aa19.28■□□□□ 0.68
SDC1-204ENST00000429035 PRELPP51888 382 aa19.28■□□□□ 0.68
SDC1-204ENST00000429035 ZNF652Q9Y2D9 606 aa19.28■□□□□ 0.68
SDC1-204ENST00000429035 HTRA3P83110 453 aa19.27■□□□□ 0.68
SDC1-204ENST00000429035 PDZRN3Q9UPQ7 1066 aa19.27■□□□□ 0.68
SDC1-204ENST00000429035 FAM177BA6PVY3 158 aa19.26■□□□□ 0.67
SDC1-204ENST00000429035 NBPF5PQ86XG9 351 aaPredicted RBP19.26■□□□□ 0.67
SDC1-204ENST00000429035 FSTL1Q12841 308 aa19.25■□□□□ 0.67
SDC1-204ENST00000429035 MIS18AQ9NYP9 233 aa19.25■□□□□ 0.67
SDC1-204ENST00000429035 HTATSF1O43719 755 aaKnown RBP19.24■□□□□ 0.67
SDC1-204ENST00000429035 GLTPD2A6NH11 291 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 TAF7Q15545 349 aaPredicted RBP19.23■□□□□ 0.67
SDC1-204ENST00000429035 PRPF40BQ6NWY9 871 aaKnown RBP19.23■□□□□ 0.67
SDC1-204ENST00000429035 NGEFQ8N5V2 710 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 SMC1BQ8NDV3 1235 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 CNKSR1Q969H4 720 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 TAOK3Q9H2K8 898 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 NIP7Q9Y221 180 aaKnown RBP eCLIP19.23■□□□□ 0.67
SDC1-204ENST00000429035 MAPK8IP3Q9UPT6 1336 aa19.23■□□□□ 0.67
SDC1-204ENST00000429035 ERFEQ4G0M1 354 aa19.22■□□□□ 0.67
SDC1-204ENST00000429035 STYK1Q6J9G0 422 aa19.22■□□□□ 0.67
SDC1-204ENST00000429035 MASTLQ96GX5 879 aa19.22■□□□□ 0.67
SDC1-204ENST00000429035 NUP98P52948 1817 aa19.22■□□□□ 0.67
SDC1-204ENST00000429035 NBPF26B4DH59 902 aa19.21■□□□□ 0.67
SDC1-204ENST00000429035 NBPF10Q6P3W6 841 aaKnown RBP19.21■□□□□ 0.67
SDC1-204ENST00000429035 NBPF15Q8N660 670 aa19.21■□□□□ 0.67
SDC1-204ENST00000429035 THUMPD2Q9BTF0 503 aaKnown RBP19.21■□□□□ 0.67
SDC1-204ENST00000429035 SRGNP10124 158 aa19.2■□□□□ 0.66
SDC1-204ENST00000429035 VEGFAP15692 232 aaPredicted RBP19.2■□□□□ 0.66
SDC1-204ENST00000429035 IFFO2Q5TF58 517 aa19.2■□□□□ 0.66
SDC1-204ENST00000429035 CLEC4GQ6UXB4 293 aa19.2■□□□□ 0.66
SDC1-204ENST00000429035 GTF2E1P29083 439 aaPredicted RBP19.19■□□□□ 0.66
SDC1-204ENST00000429035 NFE2L2Q16236 605 aa19.19■□□□□ 0.66
SDC1-204ENST00000429035 DPY19L2Q6NUT2 758 aa19.19■□□□□ 0.66
SDC1-204ENST00000429035 PNISRQ8TF01 805 aaKnown RBP19.19■□□□□ 0.66
SDC1-204ENST00000429035 HLFQ16534 295 aa19.18■□□□□ 0.66
SDC1-204ENST00000429035 SOGA3Q5TF21 947 aa19.18■□□□□ 0.66
SDC1-204ENST00000429035 CCDC93Q567U6 631 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 TPTE2Q6XPS3 522 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 KIF6Q6ZMV9 814 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 DNAJC5GQ8N7S2 189 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 KLRG1Q96E93 195 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 RRP7AQ9Y3A4 280 aaKnown RBP19.17■□□□□ 0.66
SDC1-204ENST00000429035 LTBP3Q9NS15 1303 aa19.17■□□□□ 0.66
SDC1-204ENST00000429035 MYL6BP14649 208 aa19.16■□□□□ 0.66
SDC1-204ENST00000429035 NPR1P16066 1061 aa19.16■□□□□ 0.66
SDC1-204ENST00000429035 PLEKHF1Q96S99 279 aa19.16■□□□□ 0.66
SDC1-204ENST00000429035 PNNQ9H307 717 aaKnown RBP19.15■□□□□ 0.66
SDC1-204ENST00000429035 ABCC12Q96J65 1359 aa19.15■□□□□ 0.66
SDC1-204ENST00000429035 EIF4A1P60842 406 aaKnown RBP19.14■□□□□ 0.65
SDC1-204ENST00000429035 DDNO94850 711 aaPredicted RBP19.13■□□□□ 0.65
SDC1-204ENST00000429035 GPTP24298 496 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 TTLL7Q6ZT98 887 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 NUTM1Q86Y26 1132 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 ZBTB3Q9H5J0 574 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 TSPYL4Q9UJ04 414 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 MAP3K15Q6ZN16 1313 aa19.13■□□□□ 0.65
SDC1-204ENST00000429035 OLFM4Q6UX06 510 aa19.12■□□□□ 0.65
SDC1-204ENST00000429035 ZNF277Q9NRM2 450 aaPredicted RBP19.12■□□□□ 0.65
SDC1-204ENST00000429035 POTECB2RU33 542 aa19.11■□□□□ 0.65
SDC1-204ENST00000429035 RGL2O15211 777 aa19.11■□□□□ 0.65
SDC1-204ENST00000429035 NYXQ9GZU5 481 aa19.11■□□□□ 0.65
SDC1-204ENST00000429035 SCN4AP35499 1836 aa19.1■□□□□ 0.65
SDC1-204ENST00000429035 FKBP4Q02790 459 aaKnown RBP eCLIP19.1■□□□□ 0.653e-7■■■□□ 19.2
SDC1-204ENST00000429035 ANKRD36CQ5JPF3 1778 aa19.09■□□□□ 0.65
SDC1-204ENST00000429035 EIF2S2P20042 333 aaKnown RBP19.09■□□□□ 0.65
SDC1-204ENST00000429035 RIPK4P57078 832 aa19.09■□□□□ 0.65
SDC1-204ENST00000429035 UBN2Q6ZU65 1347 aa19.08■□□□□ 0.65
SDC1-204ENST00000429035 ZNF541Q9H0D2 1346 aa19.08■□□□□ 0.65
SDC1-204ENST00000429035 ERVV-1B6SEH8 477 aa19.08■□□□□ 0.64
SDC1-204ENST00000429035 POTEIP0CG38 1075 aa19.08■□□□□ 0.64
SDC1-204ENST00000429035 POTEJP0CG39 1038 aa19.08■□□□□ 0.64
SDC1-204ENST00000429035 ALDH1B1P30837 517 aa19.08■□□□□ 0.64
SDC1-204ENST00000429035 C7orf43Q8WVR3 580 aa19.08■□□□□ 0.64
SDC1-204ENST00000429035 RPGRQ92834 1020 aaKnown RBP19.08■□□□□ 0.64
SDC1-204ENST00000429035 KLRG2A4D1S0 409 aaPredicted RBP19.07■□□□□ 0.64
SDC1-204ENST00000429035 RALBP1Q15311 655 aa19.07■□□□□ 0.64
SDC1-204ENST00000429035 RTKN2Q8IZC4 609 aa19.07■□□□□ 0.64
SDC1-204ENST00000429035 IQCA1LA6NCM1 817 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 LMOD3Q0VAK6 560 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 CHADLQ6NUI6 762 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 CCDC146Q8IYE0 955 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 JMYQ8N9B5 988 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 NECTIN2Q92692 538 aa19.06■□□□□ 0.64
SDC1-204ENST00000429035 IBTKQ9P2D0 1353 aaPredicted RBP19.06■□□□□ 0.64
SDC1-204ENST00000429035 ERBB4Q15303 1308 aa19.05■□□□□ 0.64
SDC1-204ENST00000429035 ANXA1P04083 346 aa19.05■□□□□ 0.64
SDC1-204ENST00000429035 IARSP41252 1262 aaKnown RBP19.05■□□□□ 0.64
SDC1-204ENST00000429035 DDX10Q13206 875 aaKnown RBP19.05■□□□□ 0.64
SDC1-204ENST00000429035 NEUROD2Q15784 382 aa19.05■□□□□ 0.64
SDC1-204ENST00000429035 EAPPQ56P03 285 aaPredicted RBP19.05■□□□□ 0.64
SDC1-204ENST00000429035 SUSD4Q5VX71 490 aa19.05■□□□□ 0.64
SDC1-204ENST00000429035 SYNE4Q8N205 404 aa19.05■□□□□ 0.64
SDC1-204ENST00000429035 TCERG1O14776 1098 aaKnown RBP19.04■□□□□ 0.64
SDC1-204ENST00000429035 LAMB2P55268 1798 aa19.04■□□□□ 0.64
SDC1-204ENST00000429035 MYBBP1AQ9BQG0 1328 aaKnown RBP19.03■□□□□ 0.64
SDC1-204ENST00000429035 RIC1Q4ADV7 1423 aa19.03■□□□□ 0.64
SDC1-204ENST00000429035 TMPOP42166 694 aaKnown RBP19.03■□□□□ 0.64
SDC1-204ENST00000429035 CRY2Q49AN0 593 aa19.03■□□□□ 0.64
SDC1-204ENST00000429035 GIGYF2Q6Y7W6 1299 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms