RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 DZIP3Q86Y13 1208 aaKnown RBP17.07■□□□□ 0.32
PRPF39-202ENST00000424478 MYD88Q99836 296 aa17.07■□□□□ 0.32
PRPF39-202ENST00000424478 GPTP24298 496 aa17.07■□□□□ 0.32
PRPF39-202ENST00000424478 PTPRCP08575 1304 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 DNAAF4Q8WXU2 420 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 FAM177BA6PVY3 158 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 NPM2Q86SE8 214 aaKnown RBP17.06■□□□□ 0.32
PRPF39-202ENST00000424478 API5Q9BZZ5 524 aaKnown RBP17.06■□□□□ 0.32
PRPF39-202ENST00000424478 ABCC4O15439 1325 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 KSR2Q6VAB6 950 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 COL15A1P39059 1388 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 IL6STP40189 918 aaPredicted RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 BAG6P46379 1132 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 PDGFDQ9GZP0 370 aaPredicted RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 SLC27A3Q5K4L6 730 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 UPF1Q92900 1129 aaKnown RBP eCLIP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 MSH5O43196 834 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 RTCBQ9Y3I0 505 aaKnown RBP17.04■□□□□ 0.32
PRPF39-202ENST00000424478 CNTNAP4Q9C0A0 1308 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 BICDL1Q6ZP65 573 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARHGAP45Q92619 1136 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ERBB4Q15303 1308 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARFGEF2Q9Y6D5 1785 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 MVPQ14764 893 aaKnown RBP17.03■□□□□ 0.32
PRPF39-202ENST00000424478 KIF6Q6ZMV9 814 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 MEIS3Q99687 375 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 IGKV5-2P06315 115 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 PDE3AQ14432 1141 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 DDX58O95786 925 aaKnown RBP17.03■□□□□ 0.32
PRPF39-202ENST00000424478 USPL1Q5W0Q7 1092 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 RPS6KA4O75676 772 aa17.02■□□□□ 0.32
PRPF39-202ENST00000424478 PLBD2Q8NHP8 589 aa17.02■□□□□ 0.32
PRPF39-202ENST00000424478 BEND3Q5T5X7 828 aa17.02■□□□□ 0.31
PRPF39-202ENST00000424478 ZNF831Q5JPB2 1677 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CICQ96RK0 1608 aaPredicted RBP17.01■□□□□ 0.31
PRPF39-202ENST00000424478 SYNE4Q8N205 404 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CHMP4AQ9BY43 222 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 MAP3K15Q6ZN16 1313 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 RREB1Q92766 1687 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CAMTA2O94983 1202 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 CCDC24Q8N4L8 307 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 METTL22Q9BUU2 404 aaPredicted RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 UTRNP46939 3433 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 NUP188Q5SRE5 1749 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 NBPF7P0C2Y1 421 aaPredicted RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 TRAPPC3LQ5T215 181 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 RC3H1Q5TC82 1133 aaKnown RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 TUBGCP6Q96RT7 1819 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 SRCIN1Q9C0H9 1055 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 RFC4P35249 363 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 MSL1Q68DK7 614 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 INTS3Q68E01 1043 aaKnown RBP16.99■□□□□ 0.31
PRPF39-202ENST00000424478 B4GALNT3Q6L9W6 998 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 BCL2L12Q9HB09 334 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 NUP98P52948 1817 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 C4AP0C0L4 1744 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 COL23A1Q86Y22 540 aaPredicted RBP16.99■□□□□ 0.31
PRPF39-202ENST00000424478 AFDNP55196 1824 aaKnown RBP16.98■□□□□ 0.31
PRPF39-202ENST00000424478 NEURL1BA8MQ27 555 aa16.98■□□□□ 0.31
PRPF39-202ENST00000424478 ZBTB7BO15156 539 aaPredicted RBP16.98■□□□□ 0.31
PRPF39-202ENST00000424478 USP44Q9H0E7 712 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 UBN2Q6ZU65 1347 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 NEXNQ0ZGT2 675 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 GIGYF2Q6Y7W6 1299 aaKnown RBP16.97■□□□□ 0.31
PRPF39-202ENST00000424478 ZPR1O75312 459 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 TBC1D9BQ66K14 1250 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 CCT4P50991 539 aaKnown RBP16.96■□□□□ 0.31
PRPF39-202ENST00000424478 PNPLA7Q6ZV29 1317 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 TCIRG1Q13488 830 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 LINS1Q8NG48 757 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 BCL11AQ9H165 835 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 NIP7Q9Y221 180 aaKnown RBP eCLIP16.96■□□□□ 0.316e-7■■■■■ 31.5
PRPF39-202ENST00000424478 PCDHB15Q9Y5E8 787 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 SLC15A2Q16348 729 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 UBE3BQ7Z3V4 1068 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 FAM89AQ96GI7 184 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 C9orf78Q9NZ63 289 aaPredicted RBP16.95■□□□□ 0.3
PRPF39-202ENST00000424478 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 MS4A1P11836 297 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 GCKRQ14397 625 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 NUTM1Q86Y26 1132 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 NARFQ9UHQ1 456 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 USP42Q9H9J4 1324 aaKnown RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 A0A087WZG4 1122 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 PSDA5PKW4 1024 aaPredicted RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 CCDC85AQ96PX6 553 aaPredicted RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 ZBTB40Q9NUA8 1239 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 STK32BQ9NY57 414 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 LRRFIP2Q9Y608 721 aaKnown RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 SUSD4Q5VX71 490 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 RGPD3A6NKT7 1758 aaPredicted RBP16.93■□□□□ 0.3
PRPF39-202ENST00000424478 RGPD4Q7Z3J3 1758 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 GYS1P13807 737 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 NLRP10Q86W26 655 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 ISCA1Q9BUE6 129 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms