RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 MTMR6Q9Y217 621 aa18.23■□□□□ 0.51
C9orf3-204ENST00000424143 SRGAP3O43295 1099 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 LTKP29376 864 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 NGDNQ8NEJ9 315 aaKnown RBP18.22■□□□□ 0.51
C9orf3-204ENST00000424143 DNAAF4Q8WXU2 420 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 GPATCH3Q96I76 525 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 IL1RAPL2Q9NP60 686 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 LMTK3Q96Q04 1460 aa18.22■□□□□ 0.51
C9orf3-204ENST00000424143 EIF4A1P60842 406 aaKnown RBP18.21■□□□□ 0.51
C9orf3-204ENST00000424143 MLECQ14165 292 aa18.21■□□□□ 0.51
C9orf3-204ENST00000424143 PHRF1Q9P1Y6 1649 aaKnown RBP18.21■□□□□ 0.51
C9orf3-204ENST00000424143 LMO7Q8WWI1 1683 aa18.21■□□□□ 0.51
C9orf3-204ENST00000424143 PDCP20941 246 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 RBM10P98175 930 aaKnown RBP18.2■□□□□ 0.5
C9orf3-204ENST00000424143 NECTIN1Q15223 517 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 EVI5LQ96CN4 794 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 GDPD2Q9HCC8 539 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 CYP46A1Q9Y6A2 500 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 EID1Q9Y6B2 187 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 GOLGA6L6A8MZA4 724 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 NOL8Q76FK4 1167 aaKnown RBP18.2■□□□□ 0.5
C9orf3-204ENST00000424143 CCDC94Q9BW85 323 aaPredicted RBP18.2■□□□□ 0.5
C9orf3-204ENST00000424143 DIAPH3Q9NSV4 1193 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 ECHDC1Q9NTX5 307 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 PDRG1Q9NUG6 133 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 AMOTL2Q9Y2J4 779 aa18.2■□□□□ 0.5
C9orf3-204ENST00000424143 RGPD8O14715 1765 aaPredicted RBP18.19■□□□□ 0.5
C9orf3-204ENST00000424143 NCAPD2Q15021 1401 aa18.19■□□□□ 0.5
C9orf3-204ENST00000424143 PSMA5P28066 241 aa18.19■□□□□ 0.5
C9orf3-204ENST00000424143 ANKRD1Q15327 319 aa18.19■□□□□ 0.5
C9orf3-204ENST00000424143 CYB5RLQ6IPT4 315 aa18.19■□□□□ 0.5
C9orf3-204ENST00000424143 CLASRPQ8N2M8 674 aaKnown RBP18.19■□□□□ 0.5
C9orf3-204ENST00000424143 CCDC192P0DO97 292 aa18.18■□□□□ 0.5
C9orf3-204ENST00000424143 HCLS1P14317 486 aaPredicted RBP18.18■□□□□ 0.5
C9orf3-204ENST00000424143 KIAA1524Q8TCG1 905 aa18.18■□□□□ 0.5
C9orf3-204ENST00000424143 CASTP20810 708 aaKnown RBP18.17■□□□□ 0.5
C9orf3-204ENST00000424143 GJB2P29033 226 aa18.17■□□□□ 0.5
C9orf3-204ENST00000424143 NLRP6P59044 892 aa18.17■□□□□ 0.5
C9orf3-204ENST00000424143 TSGA10IPQ3SY00 556 aa18.17■□□□□ 0.5
C9orf3-204ENST00000424143 PHAXQ9H814 394 aaKnown RBP18.17■□□□□ 0.5
C9orf3-204ENST00000424143 UTYO14607 1347 aa18.17■□□□□ 0.5
C9orf3-204ENST00000424143 CAVIN2O95810 425 aa18.16■□□□□ 0.5
C9orf3-204ENST00000424143 ZKSCAN1P17029 563 aaPredicted RBP18.16■□□□□ 0.5
C9orf3-204ENST00000424143 JCADQ9P266 1359 aa18.16■□□□□ 0.5
C9orf3-204ENST00000424143 NBPF7P0C2Y1 421 aaPredicted RBP18.16■□□□□ 0.5
C9orf3-204ENST00000424143 RBM43Q6ZSC3 357 aaKnown RBP18.16■□□□□ 0.5
C9orf3-204ENST00000424143 IP6K1Q92551 441 aa18.16■□□□□ 0.5
C9orf3-204ENST00000424143 MAP4K1Q92918 833 aa18.16■□□□□ 0.5
C9orf3-204ENST00000424143 HEG1Q9ULI3 1381 aa18.15■□□□□ 0.5
C9orf3-204ENST00000424143 KRT85P78386 507 aa18.15■□□□□ 0.5
C9orf3-204ENST00000424143 CWC27Q6UX04 472 aaKnown RBP18.15■□□□□ 0.5
C9orf3-204ENST00000424143 FAM200AQ8TCP9 573 aa18.15■□□□□ 0.5
C9orf3-204ENST00000424143 ADCY9O60503 1353 aa18.15■□□□□ 0.5
C9orf3-204ENST00000424143 GIGYF1O75420 1035 aaPredicted RBP18.14■□□□□ 0.49
C9orf3-204ENST00000424143 JAKMIP1Q96N16 626 aaKnown RBP18.14■□□□□ 0.49
C9orf3-204ENST00000424143 SCAND2PQ9GZW5 306 aaPredicted RBP18.14■□□□□ 0.49
C9orf3-204ENST00000424143 KIF3AQ9Y496 699 aa18.14■□□□□ 0.49
C9orf3-204ENST00000424143 PI4KAP2A4QPH2 592 aa18.13■□□□□ 0.49
C9orf3-204ENST00000424143 DNM1Q05193 864 aaKnown RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 SYCP1Q15431 976 aa18.13■□□□□ 0.49
C9orf3-204ENST00000424143 DNTTIP2Q5QJE6 756 aaKnown RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 UTP14CQ5TAP6 766 aaKnown RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 PI4KAP1Q8N8J0 262 aa18.13■□□□□ 0.49
C9orf3-204ENST00000424143 DDX19AQ9NUU7 478 aaKnown RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 HMG20BQ9P0W2 317 aa18.13■□□□□ 0.49
C9orf3-204ENST00000424143 DBF4Q9UBU7 674 aaPredicted RBP18.13■□□□□ 0.49
C9orf3-204ENST00000424143 FIBPO43427 364 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 PTH1RQ03431 593 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 RNF20Q5VTR2 975 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 TICAM2Q86XR7 235 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 CCDC83Q8IWF9 413 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 NECTIN2Q92692 538 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 MRC1P22897 1456 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 NFAT5O94916 1531 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 SOX12O15370 315 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 LARGE1O95461 756 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 ST3GAL1Q11201 340 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 MAP3K11Q16584 847 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 AKAP4Q5JQC9 854 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 CREB3L3Q68CJ9 461 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 TTC12Q9H892 705 aaPredicted RBP18.12■□□□□ 0.49
C9orf3-204ENST00000424143 SPG7Q9UQ90 795 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 RFX7Q2KHR2 1363 aa18.12■□□□□ 0.49
C9orf3-204ENST00000424143 LTN1O94822 1766 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 MAP4K4O95819 1239 aaPredicted RBP18.11■□□□□ 0.49
C9orf3-204ENST00000424143 IFIT2P09913 472 aaKnown RBP18.11■□□□□ 0.49
C9orf3-204ENST00000424143 ME3Q16798 604 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 AMOTQ4VCS5 1084 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 PRPF40BQ6NWY9 871 aaKnown RBP18.11■□□□□ 0.49
C9orf3-204ENST00000424143 GIMAP6Q6P9H5 292 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 KSR2Q6VAB6 950 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 CHPF2Q9P2E5 772 aa18.11■□□□□ 0.49
C9orf3-204ENST00000424143 NUTM2FA1L443 756 aa18.1■□□□□ 0.49
C9orf3-204ENST00000424143 CHAF1AQ13111 956 aaPredicted RBP18.1■□□□□ 0.49
C9orf3-204ENST00000424143 LARP1BQ659C4 914 aaKnown RBP18.1■□□□□ 0.49
C9orf3-204ENST00000424143 NUP62CLQ9H1M0 184 aa18.1■□□□□ 0.49
C9orf3-204ENST00000424143 PRDM4Q9UKN5 801 aa18.1■□□□□ 0.49
C9orf3-204ENST00000424143 RBM8AQ9Y5S9 174 aaKnown RBP18.1■□□□□ 0.49
C9orf3-204ENST00000424143 NPHP3Q7Z494 1330 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms