RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ZSCAN25Q6NSZ9 544 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 CEP85Q6P2H3 762 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 DDX46Q7L014 1031 aaKnown RBP10.92□□□□□ -0.66
LIG4-202ENST00000405925 PTPRUQ92729 1446 aa10.92□□□□□ -0.66
LIG4-202ENST00000405925 SLC5A1P13866 664 aa10.91□□□□□ -0.66
LIG4-202ENST00000405925 NACAP1Q9BZK3 213 aa10.91□□□□□ -0.66
LIG4-202ENST00000405925 CHMP5Q9NZZ3 219 aa10.91□□□□□ -0.66
LIG4-202ENST00000405925 DEPDC5O75140 1603 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 ZBTB7BO15156 539 aaPredicted RBP10.9□□□□□ -0.66
LIG4-202ENST00000405925 CCDC152Q4G0S7 254 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 NLRP3Q96P20 1036 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 ATP6V1DQ9Y5K8 247 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 PTMSP20962 102 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 SAMD1Q6SPF0 538 aaPredicted RBP10.9□□□□□ -0.66
LIG4-202ENST00000405925 RASSF8Q8NHQ8 419 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 FAM89AQ96GI7 184 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 CDC42BPGQ6DT37 1551 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 KDM4FA0A1W2PPD8 638 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 C6orf229H3BNL8 230 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 TRIM29Q14134 588 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 PLBD2Q8NHP8 589 aa10.9□□□□□ -0.66
LIG4-202ENST00000405925 UTP14AQ9BVJ6 771 aaKnown RBP10.9□□□□□ -0.66
LIG4-202ENST00000405925 IRS4O14654 1257 aaPredicted RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 NUCB1Q02818 461 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 CSPP1Q1MSJ5 1256 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 FAM182BQ5T319 152 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 CPSF1Q10570 1443 aaKnown RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 DLC1Q96QB1 1528 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 MROH1Q8NDA8 1641 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 SART3Q15020 963 aaKnown RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 NRXN1Q9ULB1 1477 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 TDO2P48775 406 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 RBM5P52756 815 aaKnown RBP eCLIP10.89□□□□□ -0.67
LIG4-202ENST00000405925 SYAP1Q96A49 352 aaPredicted RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 AIDAQ96BJ3 306 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 METTL22Q9BUU2 404 aaPredicted RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 TNS3Q68CZ2 1445 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 ZNF521Q96K83 1311 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 GOLIM4O00461 696 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 C16orf71Q8IYS4 520 aaPredicted RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 QTRT2Q9H974 415 aaKnown RBP10.89□□□□□ -0.67
LIG4-202ENST00000405925 ASAP1Q9ULH1 1129 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 CYP46A1Q9Y6A2 500 aa10.89□□□□□ -0.67
LIG4-202ENST00000405925 BMP2KLQ5H9B9 411 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 VPS53Q5VIR6 699 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 TPTE2Q6XPS3 522 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 BICC1Q9H694 974 aaKnown RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 CCDC87Q9NVE4 849 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 TRPC5Q9UL62 973 aaPredicted RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 ADGRB1O14514 1584 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 MARCH6O60337 910 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 ZNF622Q969S3 477 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIG4-202ENST00000405925 UPF3BQ9BZI7 483 aaKnown RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 KDM4AO75164 1064 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 NBPF7P0C2Y1 421 aaPredicted RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 BLOC1S2Q6QNY1 142 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 ANKRD18AQ8IVF6 992 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 JAKMIP1Q96N16 626 aaKnown RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 DCTPP1Q9H773 170 aa10.88□□□□□ -0.67
LIG4-202ENST00000405925 DDX49Q9Y6V7 483 aaKnown RBP10.88□□□□□ -0.67
LIG4-202ENST00000405925 TMEM131LA2VDJ0 1609 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 ST5P78524 1137 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 ATP2B3Q16720 1220 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 USP31Q70CQ4 1352 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 SLC3A2P08195 630 aaKnown RBP10.87□□□□□ -0.67
LIG4-202ENST00000405925 IL15P40933 162 aaPredicted RBP10.87□□□□□ -0.67
LIG4-202ENST00000405925 TRAPPC3LQ5T215 181 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 TECPR2O15040 1411 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 PDE1AP54750 535 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 MAP3K12Q12852 859 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 SMC5Q8IY18 1101 aa10.87□□□□□ -0.67
LIG4-202ENST00000405925 HELBQ8NG08 1087 aaPredicted RBP10.87□□□□□ -0.67
LIG4-202ENST00000405925 IQSEC3Q9UPP2 1182 aaPredicted RBP10.87□□□□□ -0.67
LIG4-202ENST00000405925 DDX11L8A8MPP1 907 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 MCM2P49736 904 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 NUCB2P80303 420 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 TTC22Q5TAA0 569 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 CTNNA3Q9UI47 895 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 HCLS1P14317 486 aaPredicted RBP10.86□□□□□ -0.67
LIG4-202ENST00000405925 TBC1D9Q6ZT07 1266 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 SH3TC1Q8TE82 1336 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 CYP27B1O15528 508 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 STK3Q13188 491 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 CCDC34Q96HJ3 373 aa10.86□□□□□ -0.67
LIG4-202ENST00000405925 PRPF40BQ6NWY9 871 aaKnown RBP10.85□□□□□ -0.67
LIG4-202ENST00000405925 TTLL7Q6ZT98 887 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 DZIP1Q86YF9 867 aaKnown RBP10.85□□□□□ -0.67
LIG4-202ENST00000405925 TRMT2AQ8IZ69 625 aaKnown RBP10.85□□□□□ -0.67
LIG4-202ENST00000405925 CCDC191Q8NCU4 936 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 KLHDC4Q8TBB5 520 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 EVI5LQ96CN4 794 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.85□□□□□ -0.67
LIG4-202ENST00000405925 PRAMEF22A3QJZ6 481 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 FER1L4A9Z1Z3 1794 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 CDK11BP21127 795 aaKnown RBP10.85□□□□□ -0.67
LIG4-202ENST00000405925 UNC5CLQ8IV45 518 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 SDSP20132 328 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 GCKRQ14397 625 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 PROSER3Q2NL68 480 aa10.85□□□□□ -0.67
LIG4-202ENST00000405925 ZSCAN29Q8IWY8 852 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms