RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 NFXL1Q6ZNB6 911 aa16.8■□□□□ 0.28
SCAF4-202ENST00000399804 PRPF40AO75400 957 aaKnown RBP16.8■□□□□ 0.28
SCAF4-202ENST00000399804 PHF14O94880 888 aa16.8■□□□□ 0.28
SCAF4-202ENST00000399804 EVI5LQ96CN4 794 aa16.8■□□□□ 0.28
SCAF4-202ENST00000399804 ZNF335Q9H4Z2 1342 aaPredicted RBP16.8■□□□□ 0.28
SCAF4-202ENST00000399804 A1BGP04217 495 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 STK3Q13188 491 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.79■□□□□ 0.281e-7■■□□□ 12.7
SCAF4-202ENST00000399804 PDRG1Q9NUG6 133 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 USP16Q9Y5T5 823 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 RTL1A6NKG5 1358 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 PPLO60437 1756 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 BICC1Q9H694 974 aaKnown RBP16.79■□□□□ 0.28
SCAF4-202ENST00000399804 AKAP2Q9Y2D5 859 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 RICTORQ6R327 1708 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 ADGRL3Q9HAR2 1447 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 LDHAL6AQ6ZMR3 332 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 AXIN2Q9Y2T1 843 aa16.79■□□□□ 0.28
SCAF4-202ENST00000399804 PTPRUQ92729 1446 aa16.78■□□□□ 0.28
SCAF4-202ENST00000399804 IDH1O75874 414 aaKnown RBP16.78■□□□□ 0.28
SCAF4-202ENST00000399804 DRC7Q8IY82 874 aa16.78■□□□□ 0.28
SCAF4-202ENST00000399804 C8orf37Q96NL8 207 aa16.78■□□□□ 0.28
SCAF4-202ENST00000399804 CPS1P31327 1500 aa16.78■□□□□ 0.28
SCAF4-202ENST00000399804 MSNP26038 577 aaKnown RBP16.77■□□□□ 0.28
SCAF4-202ENST00000399804 ESYT1Q9BSJ8 1104 aa16.77■□□□□ 0.28
SCAF4-202ENST00000399804 SNRKQ9NRH2 765 aa16.77■□□□□ 0.28
SCAF4-202ENST00000399804 IGHMBP2P38935 993 aaKnown RBP16.77■□□□□ 0.27
SCAF4-202ENST00000399804 ZNF652Q9Y2D9 606 aa16.77■□□□□ 0.27
SCAF4-202ENST00000399804 LARP6Q9BRS8 491 aaKnown RBP16.77■□□□□ 0.27
SCAF4-202ENST00000399804 ANKRD18BA2A2Z9 1011 aa16.76■□□□□ 0.27
SCAF4-202ENST00000399804 AKAP17AQ02040 695 aaKnown RBP16.76■□□□□ 0.27
SCAF4-202ENST00000399804 NOL10Q9BSC4 688 aaKnown RBP16.76■□□□□ 0.27
SCAF4-202ENST00000399804 SETD1BQ9UPS6 1966 aaKnown RBP16.76■□□□□ 0.27
SCAF4-202ENST00000399804 USP31Q70CQ4 1352 aa16.76■□□□□ 0.27
SCAF4-202ENST00000399804 PTCH1Q13635 1447 aa16.76■□□□□ 0.27
SCAF4-202ENST00000399804 METTL22Q9BUU2 404 aaPredicted RBP16.76■□□□□ 0.27
SCAF4-202ENST00000399804 TECPR2O15040 1411 aa16.76■□□□□ 0.27
SCAF4-202ENST00000399804 GOLIM4O00461 696 aa16.76■□□□□ 0.27
SCAF4-202ENST00000399804 CAVIN1Q6NZI2 390 aaKnown RBP16.75■□□□□ 0.27
SCAF4-202ENST00000399804 KLHDC4Q8TBB5 520 aa16.75■□□□□ 0.27
SCAF4-202ENST00000399804 ATP6V1AP38606 617 aa16.75■□□□□ 0.27
SCAF4-202ENST00000399804 PROSER3Q2NL68 480 aa16.75■□□□□ 0.27
SCAF4-202ENST00000399804 GNL3LQ9NVN8 582 aaKnown RBP16.75■□□□□ 0.27
SCAF4-202ENST00000399804 PDCP20941 246 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 ANKRD1Q15327 319 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 BRINP3Q76B58 766 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 LRRC7Q96NW7 1537 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 PRAMEF22A3QJZ6 481 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 DDX46Q7L014 1031 aaKnown RBP16.74■□□□□ 0.27
SCAF4-202ENST00000399804 FBXW7Q969H0 707 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 ERICH2A1L162 156 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 RRP12Q5JTH9 1297 aaKnown RBP16.74■□□□□ 0.27
SCAF4-202ENST00000399804 BICD2Q8TD16 824 aa16.74■□□□□ 0.27
SCAF4-202ENST00000399804 FIBPO43427 364 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 PLBD2Q8NHP8 589 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 MYO3AQ8NEV4 1616 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 KRT32Q14532 448 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 SUCLG2Q96I99 432 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.275e-7■■□□□ 12.8
SCAF4-202ENST00000399804 ZPR1O75312 459 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 SIRT2Q8IXJ6 389 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 STK11IPQ8N1F8 1099 aa16.73■□□□□ 0.27
SCAF4-202ENST00000399804 TRIM29Q14134 588 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 ZSCAN25Q6NSZ9 544 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 BEND3Q5T5X7 828 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 DNAJC10Q8IXB1 793 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 NAP1L5Q96NT1 182 aaPredicted RBP16.72■□□□□ 0.27
SCAF4-202ENST00000399804 ABCF2Q9UG63 623 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 WDR33Q9C0J8 1336 aaKnown RBP16.72■□□□□ 0.27
SCAF4-202ENST00000399804 KDM4AO75164 1064 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 GCKRQ14397 625 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 LARP1BQ659C4 914 aaKnown RBP16.72■□□□□ 0.27
SCAF4-202ENST00000399804 CHMLP26374 656 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 SSFA2P28290 1259 aa16.72■□□□□ 0.27
SCAF4-202ENST00000399804 CCDC83Q8IWF9 413 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 AMOTL1Q8IY63 956 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 ZSCAN31Q96LW9 406 aaPredicted RBP16.71■□□□□ 0.27
SCAF4-202ENST00000399804 LRP2BPQ9P2M1 347 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 PRIM1P49642 420 aaKnown RBP16.71■□□□□ 0.27
SCAF4-202ENST00000399804 CDC42BPGQ6DT37 1551 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 CTNNA3Q9UI47 895 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 OVOS2A0A0J9YW53 1432 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 OVOS2Q6IE36 1432 aa16.71■□□□□ 0.27
SCAF4-202ENST00000399804 SPATA31A3Q5VYP0 1347 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 IL15P40933 162 aaPredicted RBP16.7■□□□□ 0.26
SCAF4-202ENST00000399804 DZIP3Q86Y13 1208 aaKnown RBP16.7■□□□□ 0.26
SCAF4-202ENST00000399804 TNPO1Q92973 898 aaKnown RBP16.7■□□□□ 0.26
SCAF4-202ENST00000399804 FAM89AQ96GI7 184 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 USP26Q9BXU7 913 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 TTC41PQ6P2S7 1318 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 ERVV-2B6SEH9 535 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 TFCP2Q12800 502 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 SSH3Q8TE77 659 aa16.7■□□□□ 0.26
SCAF4-202ENST00000399804 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.69■□□□□ 0.26
SCAF4-202ENST00000399804 GOLGA6L6A8MZA4 724 aa16.69■□□□□ 0.26
SCAF4-202ENST00000399804 CD163L1Q9NR16 1453 aa16.69■□□□□ 0.26
SCAF4-202ENST00000399804 LIMCH1Q9UPQ0 1083 aa16.69■□□□□ 0.26
SCAF4-202ENST00000399804 GSPT1P15170 499 aaKnown RBP16.68■□□□□ 0.26
SCAF4-202ENST00000399804 RAI14Q9P0K7 980 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 U3KPZ7 1027 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms