RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ARID3CA6NKF2 412 aa6.74□□□□□ -1.33
HMGB1-204ENST00000399489 PRR12Q9ULL5 1215 aa6.74□□□□□ -1.33
HMGB1-204ENST00000399489 DCDC2BA2VCK2 349 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 SHISA8B8ZZ34 492 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 ADH6P28332 368 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 FAM182BQ5T319 152 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 AVENQ9NQS1 362 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 ZNF358Q9NW07 568 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 IQSEC3Q9UPP2 1182 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 C2CD2LO14523 706 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 MAPTP10636 758 aaKnown RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 POM121Q96HA1 1249 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 ZIC5Q96T25 663 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 DNAAF2Q9NVR5 837 aaKnown RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 SCHIP1Q9P0W5 487 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 ZNF232Q9UNY5 417 aa6.73□□□□□ -1.33
HMGB1-204ENST00000399489 GPC6Q9Y625 555 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-204ENST00000399489 NEURL1BA8MQ27 555 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 FAM157BP0CG42 384 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 TNP2Q05952 138 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 TEAD4Q15561 434 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 SAMD5Q5TGI4 173 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 DEPDC4Q8N2C3 294 aa6.72□□□□□ -1.33
HMGB1-204ENST00000399489 NOP53Q9NZM5 478 aaKnown RBP6.72□□□□□ -1.33
HMGB1-204ENST00000399489 EPXP11678 715 aa6.71□□□□□ -1.34
HMGB1-204ENST00000399489 SNRPNP63162 240 aaKnown RBP6.71□□□□□ -1.34
HMGB1-204ENST00000399489 PLEKHM2Q8IWE5 1019 aa6.71□□□□□ -1.34
HMGB1-204ENST00000399489 BTBD6Q96KE9 485 aa6.71□□□□□ -1.34
HMGB1-204ENST00000399489 MARK1Q9P0L2 795 aa6.71□□□□□ -1.34
HMGB1-204ENST00000399489 SERTM1A2A2V5 107 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 GNB5O14775 395 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 CD33P20138 364 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 NOS2P35228 1153 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 HDGFL1Q5TGJ6 251 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 C1orf229Q6ZS94 237 aaPredicted RBP6.7□□□□□ -1.34
HMGB1-204ENST00000399489 SLC9A9Q8IVB4 645 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 L3MBTL2Q969R5 705 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 PARP3Q9Y6F1 533 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 USP17L3A6NCW0 530 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 USP17L4A6NCW7 530 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 GRIN2CQ14957 1233 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 USP17L2Q6R6M4 530 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 USP17L1Q7RTZ2 530 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 TPCN2Q8NHX9 752 aa6.7□□□□□ -1.34
HMGB1-204ENST00000399489 TTBK1Q5TCY1 1321 aaPredicted RBP6.69□□□□□ -1.34
HMGB1-204ENST00000399489 ATP9BO43861 1147 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 ALAS2P22557 587 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 NEUROD1Q13562 356 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 CCDC102BQ68D86 513 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 ZNF295-AS1Q8N0V1 137 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 RHPN1Q8TCX5 695 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 USP3Q9Y6I4 520 aa6.69□□□□□ -1.34
HMGB1-204ENST00000399489 PALM3A6NDB9 673 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-204ENST00000399489 TXLNAP40222 546 aa6.68□□□□□ -1.34
HMGB1-204ENST00000399489 PSMA6P60900 246 aaKnown RBP6.68□□□□□ -1.34
HMGB1-204ENST00000399489 TNS4Q8IZW8 715 aa6.68□□□□□ -1.34
HMGB1-204ENST00000399489 LARGE2Q8N3Y3 721 aa6.68□□□□□ -1.34
HMGB1-204ENST00000399489 CCER1Q8TC90 406 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-204ENST00000399489 ANKIB1Q9P2G1 1089 aa6.68□□□□□ -1.34
HMGB1-204ENST00000399489 POM121CA8CG34 1229 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 ZNF468Q5VIY5 522 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-204ENST00000399489 LRRC69Q6ZNQ3 347 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 CHSY3Q70JA7 882 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 M0R2N6 131 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 OGFOD1Q8N543 542 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 ZDHHC1Q8WTX9 485 aa6.67□□□□□ -1.34
HMGB1-204ENST00000399489 MKRN1Q9UHC7 482 aaKnown RBP6.67□□□□□ -1.34
HMGB1-204ENST00000399489 EML1O00423 815 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 IGSF3O75054 1194 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 EPHA4P54764 986 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 TBCELQ5QJ74 424 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 C1orf53Q5VUE5 145 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 LINC00114Q6XXX2 140 aa6.66□□□□□ -1.34
HMGB1-204ENST00000399489 SPDYE3A6NKU9 549 aa6.65□□□□□ -1.34
HMGB1-204ENST00000399489 PCBP4P57723 403 aaKnown RBP6.65□□□□□ -1.34
HMGB1-204ENST00000399489 HIF1AQ16665 826 aa6.65□□□□□ -1.34
HMGB1-204ENST00000399489 LCE5AQ5TCM9 118 aa6.65□□□□□ -1.34
HMGB1-204ENST00000399489 CCDC82Q8N4S0 544 aa6.65□□□□□ -1.34
HMGB1-204ENST00000399489 COL17A1Q9UMD9 1497 aaPredicted RBP6.65□□□□□ -1.34
HMGB1-204ENST00000399489 ZBTB7BO15156 539 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 EFSO43281 561 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 DGKGP49619 791 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 ELOA3CA0A087WX78 387 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 ELOA3DA6NLF2 546 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 PPP1R12BO60237 982 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 ELOA3BQ3SY89 546 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 LARP1Q6PKG0 1096 aaKnown RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 FCHSD1Q86WN1 690 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 PROSER2Q86WR7 435 aaPredicted RBP6.64□□□□□ -1.35
HMGB1-204ENST00000399489 ELOA3Q8NG57 546 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 ADAMTS19Q8TE59 1207 aa6.64□□□□□ -1.35
HMGB1-204ENST00000399489 COL8A1P27658 744 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 CLDN10P78369 228 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 SYT9Q86SS6 491 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 SIX5Q8N196 739 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 GAS2L2Q8NHY3 880 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 ZNF594Q96JF6 807 aaPredicted RBP6.63□□□□□ -1.35
HMGB1-204ENST00000399489 CEP63Q96MT8 703 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 UCN2Q96RP3 112 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms