RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 PCDH11XQ9BZA7 1347 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 PCDH11YQ9BZA8 1340 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CCDC69A6NI79 296 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 RAB11FIP3O75154 756 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 MBD3O95983 291 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 SLC8A3P57103 927 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 FBXW7Q969H0 707 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 LDHCP07864 332 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 SAFB2Q14151 953 aaKnown RBP eCLIP3.17□□□□□ -1.9
CHD9-202ENST00000398510 TTC39AQ5SRH9 613 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 BBXQ8WY36 941 aaPredicted RBP3.17□□□□□ -1.9
CHD9-202ENST00000398510 CNNM1Q9NRU3 951 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 TMTC2Q8N394 836 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CCDC148Q8NFR7 591 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 TSNARE1Q96NA8 513 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 STMN4Q9H169 189 aaPredicted RBP3.17□□□□□ -1.9
CHD9-202ENST00000398510 SETBP1Q9Y6X0 1596 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 SHTN1A0MZ66 631 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 DNAAF4Q8WXU2 420 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 GCC1Q96CN9 775 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 NCAPGQ9BPX3 1015 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 IMPG2Q9BZV3 1241 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 RBM5P52756 815 aaKnown RBP eCLIP3.17□□□□□ -1.9
CHD9-202ENST00000398510 KIF4BQ2VIQ3 1234 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 TMC4Q7Z404 712 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 RIC3Q7Z5B4 369 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 HACE1Q8IYU2 909 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CEP57L1Q8IYX8 460 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 NAP1L5Q96NT1 182 aaPredicted RBP3.17□□□□□ -1.9
CHD9-202ENST00000398510 UTP14AQ9BVJ6 771 aaKnown RBP3.17□□□□□ -1.9
CHD9-202ENST00000398510 UGGT1Q9NYU2 1555 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 REREQ9P2R6 1566 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 USP8P40818 1118 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CFAP157Q5JU67 520 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 IQCA1Q86XH1 822 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CLIP2Q9UDT6 1046 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 HOMER1Q86YM7 354 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 EXOC8Q8IYI6 725 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 SECISBP2LQ93073 1101 aaKnown RBP3.17□□□□□ -1.9
CHD9-202ENST00000398510 JAKMIP2Q96AA8 810 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 ABCC5O15440 1437 aa3.17□□□□□ -1.9
CHD9-202ENST00000398510 CARNS1A5YM72 827 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GCOM1H8Y6P7 765 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 SOX12O15370 315 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 OPA1O60313 960 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 MYZAPP0CAP1 466 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 RGS3P49796 1198 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 ZFYVE27Q5T4F4 411 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 TXNDC2Q86VQ3 553 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SPATA24Q86W54 205 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 NAP1L4Q99733 375 aaKnown RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 UBAC1Q9BSL1 405 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 TRIM5Q9C035 493 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 ARHGEF40Q8TER5 1519 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 RGPD1P0DJD0 1748 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GAS8O95995 478 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 PRPF31Q8WWY3 499 aaKnown RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 EXOC4Q96A65 974 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 TSG101Q99816 390 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 LTN1O94822 1766 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 MYO10Q9HD67 2058 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 ZNF189O75820 626 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 CDAN1Q8IWY9 1227 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 FERP16591 822 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 CALML3P27482 149 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 KANK3Q6NY19 840 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 RGS22Q8NE09 1264 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 OPTNQ96CV9 577 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 ANKARQ7Z5J8 1434 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GOLGA8CPA6NN73 597 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 EIF3JO75822 258 aaKnown RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 MCTP1Q6DN14 999 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SAMD9LQ8IVG5 1584 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 DKC1O60832 514 aaKnown RBP eCLIP3.16□□□□□ -1.9
CHD9-202ENST00000398510 ZNF76P36508 570 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SUPT20HQ8NEM7 779 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 CRBNQ96SW2 442 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SALL2Q9Y467 1007 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 MINK1Q8N4C8 1332 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 ST20-MTHFSA0A0A6YYL1 179 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 ARHGEF37A1IGU5 675 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 LPXNO60711 386 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 IFIT1P09914 478 aaKnown RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 SETSIPP0DME0 302 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SLC5A1P13866 664 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GNAT2P19087 354 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 MTHFSP49914 203 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 SLKQ9H2G2 1235 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 MYOM2P54296 1465 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GOLGA6CA6NDK9 693 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GOLGA6BA6NDN3 693 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 GOLGA6DP0CG33 693 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 MAP3K12Q12852 859 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 TAF3Q5VWG9 929 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 OTUD7BQ6GQQ9 843 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 DPY19L2Q6NUT2 758 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 LARP1Q6PKG0 1096 aaKnown RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 PAXIP1Q6ZW49 1069 aaPredicted RBP3.16□□□□□ -1.9
CHD9-202ENST00000398510 SCLT1Q96NL6 688 aa3.16□□□□□ -1.9
CHD9-202ENST00000398510 FAM107BQ9H098 131 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms