RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 MEIS3Q99687 375 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 PXDNLA1KZ92 1463 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 KIF6Q6ZMV9 814 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 SMIM5Q71RC9 77 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 ZBTB40Q9NUA8 1239 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 TBC1D2BQ9UPU7 963 aa26.73■■□□□ 1.87
CPNE1-204ENST00000397443 NEXNQ0ZGT2 675 aa26.71■■□□□ 1.87
CPNE1-204ENST00000397443 METTL22Q9BUU2 404 aaPredicted RBP26.71■■□□□ 1.87
CPNE1-204ENST00000397443 ARFGEF2Q9Y6D5 1785 aa26.7■■□□□ 1.87
CPNE1-204ENST00000397443 ATP5J2-PTCD1G3V325 749 aa26.7■■□□□ 1.86
CPNE1-204ENST00000397443 EIF5P55010 431 aaKnown RBP26.7■■□□□ 1.86
CPNE1-204ENST00000397443 DZIP3Q86Y13 1208 aaKnown RBP26.7■■□□□ 1.86
CPNE1-204ENST00000397443 PCDHB15Q9Y5E8 787 aa26.7■■□□□ 1.86
CPNE1-204ENST00000397443 GNPATO15228 680 aa26.69■■□□□ 1.86
CPNE1-204ENST00000397443 TAF1LQ8IZX4 1826 aa26.69■■□□□ 1.86
CPNE1-204ENST00000397443 TXNRD1Q16881 649 aa26.69■■□□□ 1.86
CPNE1-204ENST00000397443 CNTNAP4Q9C0A0 1308 aa26.69■■□□□ 1.86
CPNE1-204ENST00000397443 CHMP4BQ9H444 224 aaKnown RBP26.69■■□□□ 1.86
CPNE1-204ENST00000397443 ATP10DQ9P241 1426 aa26.68■■□□□ 1.86
CPNE1-204ENST00000397443 IGKV5-2P06315 115 aa26.68■■□□□ 1.86
CPNE1-204ENST00000397443 PROM2Q8N271 834 aa26.68■■□□□ 1.86
CPNE1-204ENST00000397443 LINS1Q8NG48 757 aa26.68■■□□□ 1.86
CPNE1-204ENST00000397443 SLC27A3Q5K4L6 730 aa26.67■■□□□ 1.86
CPNE1-204ENST00000397443 N4BP2Q86UW6 1770 aaPredicted RBP26.67■■□□□ 1.86
CPNE1-204ENST00000397443 RREB1Q92766 1687 aa26.67■■□□□ 1.86
CPNE1-204ENST00000397443 MAP3K15Q6ZN16 1313 aa26.67■■□□□ 1.86
CPNE1-204ENST00000397443 NUP188Q5SRE5 1749 aa26.66■■□□□ 1.86
CPNE1-204ENST00000397443 TNS1Q9HBL0 1735 aaKnown RBP26.66■■□□□ 1.86
CPNE1-204ENST00000397443 COL15A1P39059 1388 aa26.66■■□□□ 1.86
CPNE1-204ENST00000397443 AAMPQ13685 434 aa26.66■■□□□ 1.86
CPNE1-204ENST00000397443 HLFQ16534 295 aa26.66■■□□□ 1.86
CPNE1-204ENST00000397443 USP44Q9H0E7 712 aa26.66■■□□□ 1.86
CPNE1-204ENST00000397443 RC3H1Q5TC82 1133 aaKnown RBP26.65■■□□□ 1.86
CPNE1-204ENST00000397443 AK7Q96M32 723 aa26.65■■□□□ 1.86
CPNE1-204ENST00000397443 NEURL1BA8MQ27 555 aa26.65■■□□□ 1.86
CPNE1-204ENST00000397443 PLSCR1O15162 318 aa26.65■■□□□ 1.86
CPNE1-204ENST00000397443 C9orf78Q9NZ63 289 aaPredicted RBP26.65■■□□□ 1.86
CPNE1-204ENST00000397443 C4BP0C0L5 1744 aa26.64■■□□□ 1.86
CPNE1-204ENST00000397443 ALDH1L1O75891 902 aa26.64■■□□□ 1.86
CPNE1-204ENST00000397443 PHF14O94880 888 aa26.64■■□□□ 1.86
CPNE1-204ENST00000397443 NBPF7P0C2Y1 421 aaPredicted RBP26.63■■□□□ 1.85
CPNE1-204ENST00000397443 AMIGO3Q86WK7 504 aa26.63■■□□□ 1.85
CPNE1-204ENST00000397443 UBTFL1P0CB47 393 aaPredicted RBP26.63■■□□□ 1.85
CPNE1-204ENST00000397443 RTCBQ9Y3I0 505 aaKnown RBP26.63■■□□□ 1.85
CPNE1-204ENST00000397443 AFDNP55196 1824 aaKnown RBP26.62■■□□□ 1.85
CPNE1-204ENST00000397443 RPS6KA4O75676 772 aa26.62■■□□□ 1.85
CPNE1-204ENST00000397443 GNAI3P08754 354 aa26.62■■□□□ 1.85
CPNE1-204ENST00000397443 JARID2Q92833 1246 aaPredicted RBP26.62■■□□□ 1.85
CPNE1-204ENST00000397443 IGHDP01880 384 aa26.61■■□□□ 1.85
CPNE1-204ENST00000397443 GPTP24298 496 aa26.61■■□□□ 1.85
CPNE1-204ENST00000397443 EN1Q05925 392 aaPredicted RBP26.61■■□□□ 1.85
CPNE1-204ENST00000397443 GIGYF2Q6Y7W6 1299 aaKnown RBP26.61■■□□□ 1.85
CPNE1-204ENST00000397443 GCKRQ14397 625 aa26.6■■□□□ 1.85
CPNE1-204ENST00000397443 LRRFIP2Q9Y608 721 aaKnown RBP26.6■■□□□ 1.85
CPNE1-204ENST00000397443 GNAI2P04899 355 aa26.59■■□□□ 1.85
CPNE1-204ENST00000397443 SF3B2Q13435 895 aaKnown RBP26.59■■□□□ 1.85
CPNE1-204ENST00000397443 TCIRG1Q13488 830 aa26.59■■□□□ 1.85
CPNE1-204ENST00000397443 GRM8O00222 908 aa26.59■■□□□ 1.85
CPNE1-204ENST00000397443 CAMTA2O94983 1202 aa26.59■■□□□ 1.85
CPNE1-204ENST00000397443 RTL5Q5HYW3 569 aaPredicted RBP26.59■■□□□ 1.85
CPNE1-204ENST00000397443 A0A087WZG4 1122 aa26.58■■□□□ 1.85
CPNE1-204ENST00000397443 ERVV-1B6SEH8 477 aa26.58■■□□□ 1.85
CPNE1-204ENST00000397443 EZH2Q15910 746 aaKnown RBP26.57■■□□□ 1.84
CPNE1-204ENST00000397443 NUP98P52948 1817 aa26.57■■□□□ 1.84
CPNE1-204ENST00000397443 CWC25Q9NXE8 425 aaPredicted RBP26.57■■□□□ 1.84
CPNE1-204ENST00000397443 SRP68Q9UHB9 627 aaKnown RBP26.57■■□□□ 1.84
CPNE1-204ENST00000397443 ARHGEF1Q92888 912 aaKnown RBP26.56■■□□□ 1.84
CPNE1-204ENST00000397443 UBE3BQ7Z3V4 1068 aa26.55■■□□□ 1.84
CPNE1-204ENST00000397443 ISCA1Q9BUE6 129 aa26.55■■□□□ 1.84
CPNE1-204ENST00000397443 HSP90AB3PQ58FF7 597 aa26.55■■□□□ 1.84
CPNE1-204ENST00000397443 TRAPPC3LQ5T215 181 aa26.55■■□□□ 1.84
CPNE1-204ENST00000397443 DEFB132Q7Z7B7 95 aa26.55■■□□□ 1.84
CPNE1-204ENST00000397443 RWDD1Q9H446 243 aaPredicted RBP26.55■■□□□ 1.84
CPNE1-204ENST00000397443 CEP85Q6P2H3 762 aa26.54■■□□□ 1.84
CPNE1-204ENST00000397443 SIRT2Q8IXJ6 389 aa26.54■■□□□ 1.84
CPNE1-204ENST00000397443 CCDC191Q8NCU4 936 aa26.54■■□□□ 1.84
CPNE1-204ENST00000397443 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.53■■□□□ 1.84
CPNE1-204ENST00000397443 ZPR1O75312 459 aa26.53■■□□□ 1.84
CPNE1-204ENST00000397443 USPL1Q5W0Q7 1092 aa26.53■■□□□ 1.84
CPNE1-204ENST00000397443 RFC4P35249 363 aa26.53■■□□□ 1.84
CPNE1-204ENST00000397443 ZNF827Q17R98 1081 aa26.53■■□□□ 1.84
CPNE1-204ENST00000397443 FAM177BA6PVY3 158 aa26.52■■□□□ 1.84
CPNE1-204ENST00000397443 SUCLG2Q96I99 432 aa26.52■■□□□ 1.84
CPNE1-204ENST00000397443 CAMKK2Q96RR4 588 aa26.52■■□□□ 1.84
CPNE1-204ENST00000397443 KDM2BQ8NHM5 1336 aa26.52■■□□□ 1.84
CPNE1-204ENST00000397443 BAG6P46379 1132 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 TFCP2L1Q9NZI6 479 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 UBR3Q6ZT12 1888 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 CENPQQ7L2Z9 268 aaPredicted RBP26.51■■□□□ 1.83
CPNE1-204ENST00000397443 NLRP10Q86W26 655 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 ANKRD44Q8N8A2 993 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 NARFQ9UHQ1 456 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 ZNF652Q9Y2D9 606 aa26.51■■□□□ 1.83
CPNE1-204ENST00000397443 ANKRD36CQ5JPF3 1778 aa26.5■■□□□ 1.83
CPNE1-204ENST00000397443 UTYO14607 1347 aa26.5■■□□□ 1.83
CPNE1-204ENST00000397443 UBN2Q6ZU65 1347 aa26.5■■□□□ 1.83
CPNE1-204ENST00000397443 BICDL1Q6ZP65 573 aa26.5■■□□□ 1.83
CPNE1-204ENST00000397443 NIP7Q9Y221 180 aaKnown RBP eCLIP26.5■■□□□ 1.83
CPNE1-204ENST00000397443 HDAC1Q13547 482 aaPredicted RBP26.49■■□□□ 1.83
CPNE1-204ENST00000397443 RPAP2Q8IXW5 612 aaPredicted RBP26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms