RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 WNK3Q9BYP7 1800 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 NUCB2P80303 420 aa13.58□□□□□ -0.23
CUX1-204ENST00000393824 LMBRD1Q9NUN5 540 aa13.58□□□□□ -0.23
CUX1-204ENST00000393824 NOB1Q9ULX3 412 aaKnown RBP13.58□□□□□ -0.23
CUX1-204ENST00000393824 THRAP3Q9Y2W1 955 aaKnown RBP13.58□□□□□ -0.23
CUX1-204ENST00000393824 SIPA1L3O60292 1781 aaPredicted RBP13.58□□□□□ -0.24
CUX1-204ENST00000393824 CYP2E1P05181 493 aaPredicted RBP13.58□□□□□ -0.24
CUX1-204ENST00000393824 CHD1LQ86WJ1 897 aa13.58□□□□□ -0.24
CUX1-204ENST00000393824 GJD4Q96KN9 370 aaPredicted RBP13.58□□□□□ -0.24
CUX1-204ENST00000393824 MRC1P22897 1456 aa13.58□□□□□ -0.24
CUX1-204ENST00000393824 CAVIN1Q6NZI2 390 aaKnown RBP13.57□□□□□ -0.24
CUX1-204ENST00000393824 FBXO41Q8TF61 875 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 GCC1Q96CN9 775 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 ZSCAN20P17040 1043 aaPredicted RBP13.57□□□□□ -0.24
CUX1-204ENST00000393824 CABP4P57796 275 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 ZNF790Q6PG37 636 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 PTF1AQ7RTS3 328 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 TMEM57Q8N5G2 664 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 CCDC39Q9UFE4 941 aa13.57□□□□□ -0.24
CUX1-204ENST00000393824 KDM3BQ7LBC6 1761 aa13.56□□□□□ -0.24
CUX1-204ENST00000393824 A0A0G2JS52 829 aa13.56□□□□□ -0.24
CUX1-204ENST00000393824 NCLP19338 710 aaKnown RBP13.56□□□□□ -0.24
CUX1-204ENST00000393824 PRIM1P49642 420 aaKnown RBP13.56□□□□□ -0.24
CUX1-204ENST00000393824 ZNF496Q96IT1 587 aaPredicted RBP13.56□□□□□ -0.24
CUX1-204ENST00000393824 QTRT2Q9H974 415 aaKnown RBP13.56□□□□□ -0.24
CUX1-204ENST00000393824 ATRNO75882 1429 aa13.56□□□□□ -0.24
CUX1-204ENST00000393824 ACSBG1Q96GR2 724 aa13.56□□□□□ -0.24
CUX1-204ENST00000393824 MCTP1Q6DN14 999 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 PIGBQ92521 554 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 ARHGAP45Q92619 1136 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 LNPKQ9C0E8 428 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 KAT6BQ8WYB5 2073 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.55□□□□□ -0.24
CUX1-204ENST00000393824 KCNQ2O43526 872 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 ANXA1P04083 346 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 G2E3Q7L622 706 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 MRPL50Q8N5N7 158 aaKnown RBP13.55□□□□□ -0.24
CUX1-204ENST00000393824 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
CUX1-204ENST00000393824 ASAP1Q9ULH1 1129 aa13.55□□□□□ -0.24
CUX1-204ENST00000393824 HEG1Q9ULI3 1381 aa13.54□□□□□ -0.24
CUX1-204ENST00000393824 SYTL4Q96C24 671 aaPredicted RBP13.54□□□□□ -0.24
CUX1-204ENST00000393824 RGS17Q9UGC6 210 aaPredicted RBP13.54□□□□□ -0.24
CUX1-204ENST00000393824 ERVV-2B6SEH9 535 aa13.53□□□□□ -0.24
CUX1-204ENST00000393824 GIGYF1O75420 1035 aaPredicted RBP13.53□□□□□ -0.24
CUX1-204ENST00000393824 EIF2S2P20042 333 aaKnown RBP13.53□□□□□ -0.24
CUX1-204ENST00000393824 LRSAM1Q6UWE0 723 aa13.53□□□□□ -0.24
CUX1-204ENST00000393824 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
CUX1-204ENST00000393824 BABAM1Q9NWV8 329 aa13.53□□□□□ -0.24
CUX1-204ENST00000393824 TRPC5Q9UL62 973 aaPredicted RBP13.53□□□□□ -0.24
CUX1-204ENST00000393824 MYRIPQ8NFW9 859 aa13.53□□□□□ -0.24
CUX1-204ENST00000393824 IPO4Q8TEX9 1081 aaKnown RBP13.53□□□□□ -0.24
CUX1-204ENST00000393824 CDCA7Q9BWT1 371 aaPredicted RBP13.53□□□□□ -0.24
CUX1-204ENST00000393824 PTCD1O75127 700 aaKnown RBP13.52□□□□□ -0.24
CUX1-204ENST00000393824 PIP4K2AP48426 406 aaPredicted RBP13.52□□□□□ -0.24
CUX1-204ENST00000393824 PROSER3Q2NL68 480 aa13.52□□□□□ -0.24
CUX1-204ENST00000393824 GTPBP4Q9BZE4 634 aaKnown RBP13.52□□□□□ -0.24
CUX1-204ENST00000393824 CWC22Q9HCG8 908 aaKnown RBP13.52□□□□□ -0.24
CUX1-204ENST00000393824 ZHX1Q9UKY1 873 aaPredicted RBP13.52□□□□□ -0.24
CUX1-204ENST00000393824 SLC4A2P04920 1241 aa13.52□□□□□ -0.25
CUX1-204ENST00000393824 RABEP1Q15276 862 aa13.52□□□□□ -0.25
CUX1-204ENST00000393824 THSD7AQ9UPZ6 1657 aa13.52□□□□□ -0.25
CUX1-204ENST00000393824 SEPT12Q8IYM1 358 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 TMOD3Q9NYL9 352 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 USP16Q9Y5T5 823 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 ONECUT3O60422 494 aaPredicted RBP13.51□□□□□ -0.25
CUX1-204ENST00000393824 KIF20AO95235 890 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 GTF2F1P35269 517 aaKnown RBP eCLIP13.51□□□□□ -0.252e-8■■■□□ 18.7
CUX1-204ENST00000393824 HDGFL1Q5TGJ6 251 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 GPT2Q8TD30 523 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 PRIMPOLQ96LW4 560 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 SLC4A9Q96Q91 983 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 PRDM10Q9NQV6 1147 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 ATG3Q9NT62 314 aa13.51□□□□□ -0.25
CUX1-204ENST00000393824 BCL9O00512 1426 aa13.5□□□□□ -0.25
CUX1-204ENST00000393824 ZBTB7BO15156 539 aaPredicted RBP13.5□□□□□ -0.25
CUX1-204ENST00000393824 CHPF2Q9P2E5 772 aa13.5□□□□□ -0.25
CUX1-204ENST00000393824 PHAXQ9H814 394 aaKnown RBP13.5□□□□□ -0.25
CUX1-204ENST00000393824 DOT1LQ8TEK3 1739 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 KCPQ6ZWJ8 1503 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 RGS12O14924 1447 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 HMGN5P82970 282 aaKnown RBP13.49□□□□□ -0.25
CUX1-204ENST00000393824 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 ITGB4P16144 1822 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 C5P01031 1676 aa13.49□□□□□ -0.25
CUX1-204ENST00000393824 PRPF40AO75400 957 aaKnown RBP13.48□□□□□ -0.25
CUX1-204ENST00000393824 TTC5Q8N0Z6 440 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 AK9Q5TCS8 1911 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 F6X3S4 739 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 CDC45O75419 566 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 ANKRD45Q5TZF3 282 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 TMEM63CQ9P1W3 806 aa13.48□□□□□ -0.25
CUX1-204ENST00000393824 PDIA6Q15084 440 aa13.47□□□□□ -0.25
CUX1-204ENST00000393824 POTEAQ6S8J7 498 aa13.47□□□□□ -0.25
CUX1-204ENST00000393824 ARID3AQ99856 593 aa13.47□□□□□ -0.25
CUX1-204ENST00000393824 RBM27Q9P2N5 1060 aaKnown RBP13.47□□□□□ -0.25
CUX1-204ENST00000393824 PAPPAQ13219 1627 aa13.46□□□□□ -0.25
CUX1-204ENST00000393824 LETM1O95202 739 aaPredicted RBP13.46□□□□□ -0.25
CUX1-204ENST00000393824 KCNQ4P56696 695 aa13.46□□□□□ -0.25
CUX1-204ENST00000393824 PKP1Q13835 747 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms