RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GJB2P29033 226 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 PLCB2Q00722 1185 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 HYPKQ9NX55 129 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 DNM1Q05193 864 aaKnown RBP25.3■■□□□ 1.64
UPF3A-202ENST00000375299 CWC27Q6UX04 472 aaKnown RBP25.3■■□□□ 1.64
UPF3A-202ENST00000375299 KIAA1524Q8TCG1 905 aa25.3■■□□□ 1.64
UPF3A-202ENST00000375299 CCDC83Q8IWF9 413 aa25.29■■□□□ 1.64
UPF3A-202ENST00000375299 CPA1P15085 419 aa25.29■■□□□ 1.64
UPF3A-202ENST00000375299 AMPHP49418 695 aa25.29■■□□□ 1.64
UPF3A-202ENST00000375299 KCNF1Q9H3M0 494 aa25.29■■□□□ 1.64
UPF3A-202ENST00000375299 SPG7Q9UQ90 795 aa25.29■■□□□ 1.64
UPF3A-202ENST00000375299 PIK3C2AO00443 1686 aa25.28■■□□□ 1.64
UPF3A-202ENST00000375299 SRGAP3O43295 1099 aa25.28■■□□□ 1.64
UPF3A-202ENST00000375299 PRDM10Q9NQV6 1147 aa25.28■■□□□ 1.64
UPF3A-202ENST00000375299 BABAM1Q9NWV8 329 aa25.28■■□□□ 1.64
UPF3A-202ENST00000375299 USP42Q9H9J4 1324 aaKnown RBP25.27■■□□□ 1.64
UPF3A-202ENST00000375299 VPS53Q5VIR6 699 aa25.27■■□□□ 1.64
UPF3A-202ENST00000375299 ZSCAN31Q96LW9 406 aaPredicted RBP25.27■■□□□ 1.64
UPF3A-202ENST00000375299 PHAXQ9H814 394 aaKnown RBP25.27■■□□□ 1.64
UPF3A-202ENST00000375299 HDGFL1Q5TGJ6 251 aa25.26■■□□□ 1.63
UPF3A-202ENST00000375299 SH2B1Q9NRF2 756 aaPredicted RBP25.26■■□□□ 1.63
UPF3A-202ENST00000375299 PYCARDQ9ULZ3 195 aa25.26■■□□□ 1.63
UPF3A-202ENST00000375299 TAF7Q15545 349 aaPredicted RBP25.26■■□□□ 1.63
UPF3A-202ENST00000375299 BCL2L12Q9HB09 334 aa25.26■■□□□ 1.63
UPF3A-202ENST00000375299 PDRG1Q9NUG6 133 aa25.26■■□□□ 1.63
UPF3A-202ENST00000375299 GOLGA6L6A8MZA4 724 aa25.25■■□□□ 1.63
UPF3A-202ENST00000375299 CCDC192P0DO97 292 aa25.25■■□□□ 1.63
UPF3A-202ENST00000375299 IL17REQ8NFR9 667 aa25.25■■□□□ 1.63
UPF3A-202ENST00000375299 DIAPH3Q9NSV4 1193 aa25.25■■□□□ 1.63
UPF3A-202ENST00000375299 TTC41PQ6P2S7 1318 aa25.25■■□□□ 1.63
UPF3A-202ENST00000375299 RUFY2Q8WXA3 655 aa25.24■■□□□ 1.63
UPF3A-202ENST00000375299 JAKMIP1Q96N16 626 aaKnown RBP25.24■■□□□ 1.63
UPF3A-202ENST00000375299 CHD2O14647 1828 aaKnown RBP25.24■■□□□ 1.63
UPF3A-202ENST00000375299 GLRX3O76003 335 aaKnown RBP25.24■■□□□ 1.63
UPF3A-202ENST00000375299 HSP90AB4PQ58FF6 505 aa25.24■■□□□ 1.63
UPF3A-202ENST00000375299 UTP14CQ5TAP6 766 aaKnown RBP25.24■■□□□ 1.63
UPF3A-202ENST00000375299 TM6SF1Q9BZW5 370 aa25.24■■□□□ 1.63
UPF3A-202ENST00000375299 DMTNQ08495 405 aa25.23■■□□□ 1.63
UPF3A-202ENST00000375299 CHAF1AQ13111 956 aaPredicted RBP25.23■■□□□ 1.63
UPF3A-202ENST00000375299 ZSWIM6Q9HCJ5 1215 aa25.23■■□□□ 1.63
UPF3A-202ENST00000375299 FAM177BA6PVY3 158 aa25.23■■□□□ 1.63
UPF3A-202ENST00000375299 VPS37CA5D8V6 355 aaPredicted RBP25.22■■□□□ 1.63
UPF3A-202ENST00000375299 PTH1RQ03431 593 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 ST3GAL1Q11201 340 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 ADCK5Q3MIX3 580 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 SPC24Q8NBT2 197 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 KCNB2Q92953 911 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 CYP46A1Q9Y6A2 500 aa25.22■■□□□ 1.63
UPF3A-202ENST00000375299 NBPF7P0C2Y1 421 aaPredicted RBP25.22■■□□□ 1.63
UPF3A-202ENST00000375299 NWD1Q149M9 1564 aa25.21■■□□□ 1.63
UPF3A-202ENST00000375299 NLRP6P59044 892 aa25.21■■□□□ 1.63
UPF3A-202ENST00000375299 PPP4R3BQ5MIZ7 849 aa25.21■■□□□ 1.63
UPF3A-202ENST00000375299 PRPF40BQ6NWY9 871 aaKnown RBP25.21■■□□□ 1.63
UPF3A-202ENST00000375299 ZSCAN20P17040 1043 aaPredicted RBP25.2■■□□□ 1.63
UPF3A-202ENST00000375299 FAM200AQ8TCP9 573 aa25.2■■□□□ 1.63
UPF3A-202ENST00000375299 RIOK3O14730 519 aaKnown RBP25.2■■□□□ 1.62
UPF3A-202ENST00000375299 PLPPR3Q6T4P5 718 aa25.19■■□□□ 1.62
UPF3A-202ENST00000375299 DTNBO60941 627 aa25.19■■□□□ 1.62
UPF3A-202ENST00000375299 ME3Q16798 604 aa25.19■■□□□ 1.62
UPF3A-202ENST00000375299 TTC6Q86TZ1 520 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 ANKARQ7Z5J8 1434 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 HOXC9P31274 260 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 KRT85P78386 507 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 CBX1P83916 185 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 MAP3K11Q16584 847 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 BEND3Q5T5X7 828 aa25.18■■□□□ 1.62
UPF3A-202ENST00000375299 THEMISQ8N1K5 641 aaPredicted RBP25.18■■□□□ 1.62
UPF3A-202ENST00000375299 MARF1Q9Y4F3 1742 aaKnown RBP25.18■■□□□ 1.62
UPF3A-202ENST00000375299 OS9Q13438 667 aaPredicted RBP25.17■■□□□ 1.62
UPF3A-202ENST00000375299 NUP62CLQ9H1M0 184 aa25.17■■□□□ 1.62
UPF3A-202ENST00000375299 ELP1O95163 1332 aa25.17■■□□□ 1.62
UPF3A-202ENST00000375299 ATP2B3Q16720 1220 aa25.17■■□□□ 1.62
UPF3A-202ENST00000375299 PDCL2Q8N4E4 241 aa25.17■■□□□ 1.62
UPF3A-202ENST00000375299 MRVI1Q9Y6F6 885 aa25.17■■□□□ 1.62
UPF3A-202ENST00000375299 PDIA4P13667 645 aaKnown RBP25.16■■□□□ 1.62
UPF3A-202ENST00000375299 NECTIN1Q15223 517 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 DNAAF4Q8WXU2 420 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 ANKRD7Q92527 254 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 TYRO3Q06418 890 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 NUTM2GQ5VZR2 741 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 CLASRPQ8N2M8 674 aaKnown RBP25.16■■□□□ 1.62
UPF3A-202ENST00000375299 NECAB1Q8N987 351 aa25.16■■□□□ 1.62
UPF3A-202ENST00000375299 CCDC171Q6TFL3 1326 aa25.15■■□□□ 1.62
UPF3A-202ENST00000375299 CTIFO43310 598 aaKnown RBP25.15■■□□□ 1.62
UPF3A-202ENST00000375299 LARP1BQ659C4 914 aaKnown RBP25.15■■□□□ 1.62
UPF3A-202ENST00000375299 ECHDC1Q9NTX5 307 aa25.15■■□□□ 1.62
UPF3A-202ENST00000375299 ZKSCAN1P17029 563 aaPredicted RBP25.15■■□□□ 1.62
UPF3A-202ENST00000375299 PTGS1P23219 599 aa25.15■■□□□ 1.62
UPF3A-202ENST00000375299 LIG1P18858 919 aa25.14■■□□□ 1.62
UPF3A-202ENST00000375299 EIF2S2P20042 333 aaKnown RBP25.14■■□□□ 1.62
UPF3A-202ENST00000375299 TPCN1Q9ULQ1 816 aa25.14■■□□□ 1.62
UPF3A-202ENST00000375299 CDC37L1Q7L3B6 337 aa25.13■■□□□ 1.61
UPF3A-202ENST00000375299 KCNA6P17658 529 aa25.13■■□□□ 1.61
UPF3A-202ENST00000375299 GPATCH3Q96I76 525 aa25.13■■□□□ 1.61
UPF3A-202ENST00000375299 PI4KAP2A4QPH2 592 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 MTX1Q13505 466 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 PI4KAP1Q8N8J0 262 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 RBM8AQ9Y5S9 174 aaKnown RBP25.12■■□□□ 1.61
UPF3A-202ENST00000375299 USP54Q70EL1 1684 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 CREB3L3Q68CJ9 461 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms