RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 PLCD3Q8N3E9 789 aa18.6■□□□□ 0.57
CLSTN1-201ENST00000361311 PHACTR3Q96KR7 559 aa18.6■□□□□ 0.57
CLSTN1-201ENST00000361311 ZSCAN16Q9H4T2 348 aaPredicted RBP18.6■□□□□ 0.57
CLSTN1-201ENST00000361311 NUDT16Q96DE0 195 aaKnown RBP18.6■□□□□ 0.57
CLSTN1-201ENST00000361311 SHANK2Q9UPX8 1470 aa18.6■□□□□ 0.57
CLSTN1-201ENST00000361311 GNAT3A8MTJ3 354 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 PIP4K2AP48426 406 aaPredicted RBP18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 AOPEPQ8N6M6 819 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 ATP8B2P98198 1209 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 XBP1P17861 261 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 C8orf76Q96K31 380 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 TRIM34Q9BYJ4 488 aa18.59■□□□□ 0.57
CLSTN1-201ENST00000361311 GOLGA6L9A6NEM1 432 aa18.58■□□□□ 0.57
CLSTN1-201ENST00000361311 VGLL3A8MV65 326 aa18.58■□□□□ 0.57
CLSTN1-201ENST00000361311 CCT2P78371 535 aaKnown RBP18.58■□□□□ 0.57
CLSTN1-201ENST00000361311 SYT10Q6XYQ8 523 aa18.58■□□□□ 0.57
CLSTN1-201ENST00000361311 KRT24Q2M2I5 525 aa18.58■□□□□ 0.56
CLSTN1-201ENST00000361311 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
CLSTN1-201ENST00000361311 ABCC2Q92887 1545 aa18.58■□□□□ 0.56
CLSTN1-201ENST00000361311 ZNHIT6Q9NWK9 470 aaKnown RBP18.58■□□□□ 0.56
CLSTN1-201ENST00000361311 RBM8AQ9Y5S9 174 aaKnown RBP18.57■□□□□ 0.56
CLSTN1-201ENST00000361311 MARCH6O60337 910 aa18.57■□□□□ 0.56
CLSTN1-201ENST00000361311 ISM2Q6H9L7 571 aa18.57■□□□□ 0.56
CLSTN1-201ENST00000361311 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.57■□□□□ 0.56
CLSTN1-201ENST00000361311 SRRTQ9BXP5 876 aaKnown RBP18.57■□□□□ 0.56
CLSTN1-201ENST00000361311 TUBB4AP04350 444 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 CPA1P15085 419 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 ELF2Q15723 593 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 HSP90AB3PQ58FF7 597 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 DNAAF4Q8WXU2 420 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 CCDC191Q8NCU4 936 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 CCDC12Q8WUD4 166 aaPredicted RBP18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 PPFIA3O75145 1194 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 MCM6Q14566 821 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 BRMS1Q9HCU9 246 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 POLKQ9UBT6 870 aa18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 U3KPZ7 1027 aaPredicted RBP18.56■□□□□ 0.56
CLSTN1-201ENST00000361311 GTF2A1P52655 376 aaPredicted RBP18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 PLEKHO1Q53GL0 409 aaPredicted RBP18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 ATP10BO94823 1461 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 HMGB1P09429 215 aaKnown RBP18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 ZNF75DP51815 510 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 NEK1Q96PY6 1258 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 CTNNA3Q9UI47 895 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 POTEB2H3BUK9 544 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 SART3Q15020 963 aaKnown RBP18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 C10orf67Q8IYJ2 551 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 GPATCH11Q8N954 259 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 CBX8Q9HC52 389 aa18.55■□□□□ 0.56
CLSTN1-201ENST00000361311 MAP9Q49MG5 647 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 ABTB2Q8N961 1025 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 BRF1Q92994 677 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 BCORL1Q5H9F3 1711 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 CDKL5O76039 1030 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 CALRP27797 417 aaKnown RBP18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 SHTN1A0MZ66 631 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 UBASH3AP57075 661 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 FAM173BQ6P4H8 233 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 ZNF530Q6P9A1 599 aaPredicted RBP18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 CCDC148Q8NFR7 591 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 MAGEC2Q9UBF1 373 aaPredicted RBP18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 VPS53Q5VIR6 699 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 TRIM22Q8IYM9 498 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 SMARCC1Q92922 1105 aaPredicted RBP18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 HMG20BQ9P0W2 317 aa18.54■□□□□ 0.56
CLSTN1-201ENST00000361311 CPLX3Q8WVH0 158 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 DUOX2Q9NRD8 1548 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 KDM5BQ9UGL1 1544 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 IVLP07476 585 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 CCDC181Q5TID7 509 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 PUS7Q96PZ0 661 aaKnown RBP18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 CEP89Q96ST8 783 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 RASSF4Q9H2L5 321 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 CLSTN1O94985 981 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 FAM107BQ9H098 131 aa18.53■□□□□ 0.56
CLSTN1-201ENST00000361311 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.56
CLSTN1-201ENST00000361311 CENPHQ9H3R5 247 aa18.52■□□□□ 0.56
CLSTN1-201ENST00000361311 IRX3P78415 501 aaPredicted RBP18.52■□□□□ 0.56
CLSTN1-201ENST00000361311 KLHL10Q6JEL2 608 aa18.52■□□□□ 0.56
CLSTN1-201ENST00000361311 PYCARDQ9ULZ3 195 aa18.52■□□□□ 0.56
CLSTN1-201ENST00000361311 POLR3DP05423 398 aaPredicted RBP18.52■□□□□ 0.55
CLSTN1-201ENST00000361311 CAPN2P17655 700 aa18.52■□□□□ 0.55
CLSTN1-201ENST00000361311 RAPGEF4Q8WZA2 1011 aa18.52■□□□□ 0.55
CLSTN1-201ENST00000361311 MBD5Q9P267 1494 aa18.52■□□□□ 0.55
CLSTN1-201ENST00000361311 MSH6P52701 1360 aa18.52■□□□□ 0.55
CLSTN1-201ENST00000361311 LMOD1P29536 600 aaPredicted RBP18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 FKBP4Q02790 459 aaKnown RBP eCLIP18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 PSME1Q06323 249 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 RRP12Q5JTH9 1297 aaKnown RBP18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 CCDC158Q5M9N0 1113 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 IQCEQ6IPM2 695 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 MRPS27Q92552 414 aaKnown RBP18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 SAMD9Q5K651 1589 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 SYCP2Q9BX26 1530 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 LRMPQ12912 555 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 CNNM3Q8NE01 707 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 RSPH14Q9UHP6 348 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 DTNBO60941 627 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 BTBD11A6QL63 1104 aa18.51■□□□□ 0.55
CLSTN1-201ENST00000361311 PDLIM2Q96JY6 352 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms