RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 COL5A3P25940 1745 aaPredicted RBP18.5■□□□□ 0.55
CXCL12-201ENST00000343575 SRCIN1Q9C0H9 1055 aa18.5■□□□□ 0.55
CXCL12-201ENST00000343575 RREB1Q92766 1687 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 LY75O60449 1722 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 IGKV5-2P06315 115 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 CRKLP46109 303 aaKnown RBP18.49■□□□□ 0.55
CXCL12-201ENST00000343575 CWF19L2Q2TBE0 894 aaKnown RBP18.49■□□□□ 0.55
CXCL12-201ENST00000343575 RIC3Q7Z5B4 369 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 LINC00116Q8NCU8 138 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 PLBD2Q8NHP8 589 aa18.49■□□□□ 0.55
CXCL12-201ENST00000343575 IPO9Q96P70 1041 aaKnown RBP18.49■□□□□ 0.55
CXCL12-201ENST00000343575 ARFGEF2Q9Y6D5 1785 aa18.48■□□□□ 0.55
CXCL12-201ENST00000343575 TRIM37O94972 964 aa18.48■□□□□ 0.55
CXCL12-201ENST00000343575 SIRT2Q8IXJ6 389 aa18.48■□□□□ 0.55
CXCL12-201ENST00000343575 METTL22Q9BUU2 404 aaPredicted RBP18.48■□□□□ 0.55
CXCL12-201ENST00000343575 NUP188Q5SRE5 1749 aa18.48■□□□□ 0.55
CXCL12-201ENST00000343575 CHMP4BQ9H444 224 aaKnown RBP18.48■□□□□ 0.55
CXCL12-201ENST00000343575 LINS1Q8NG48 757 aa18.47■□□□□ 0.55
CXCL12-201ENST00000343575 CCDC87Q9NVE4 849 aa18.47■□□□□ 0.55
CXCL12-201ENST00000343575 ALDH1L1O75891 902 aa18.46■□□□□ 0.55
CXCL12-201ENST00000343575 EIF5P55010 431 aaKnown RBP18.46■□□□□ 0.55
CXCL12-201ENST00000343575 NBPF7P0C2Y1 421 aaPredicted RBP18.46■□□□□ 0.54
CXCL12-201ENST00000343575 IL6STP40189 918 aaPredicted RBP18.46■□□□□ 0.54
CXCL12-201ENST00000343575 HDAC1Q13547 482 aaPredicted RBP18.45■□□□□ 0.54
CXCL12-201ENST00000343575 MYD88Q99836 296 aa18.45■□□□□ 0.54
CXCL12-201ENST00000343575 ZBTB3Q9H5J0 574 aa18.45■□□□□ 0.54
CXCL12-201ENST00000343575 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
CXCL12-201ENST00000343575 NEURL1BA8MQ27 555 aa18.44■□□□□ 0.54
CXCL12-201ENST00000343575 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
CXCL12-201ENST00000343575 CENPQQ7L2Z9 268 aaPredicted RBP18.44■□□□□ 0.54
CXCL12-201ENST00000343575 ILDR1Q86SU0 546 aaPredicted RBP18.44■□□□□ 0.54
CXCL12-201ENST00000343575 LRRC4BQ9NT99 713 aa18.44■□□□□ 0.54
CXCL12-201ENST00000343575 IBTKQ9P2D0 1353 aaPredicted RBP18.44■□□□□ 0.54
CXCL12-201ENST00000343575 CCNL1Q9UK58 526 aaPredicted RBP18.43■□□□□ 0.54
CXCL12-201ENST00000343575 TAF1LQ8IZX4 1826 aa18.43■□□□□ 0.54
CXCL12-201ENST00000343575 CEP85Q6P2H3 762 aa18.43■□□□□ 0.54
CXCL12-201ENST00000343575 ATP5J2-PTCD1G3V325 749 aa18.42■□□□□ 0.54
CXCL12-201ENST00000343575 GNAI3P08754 354 aa18.42■□□□□ 0.54
CXCL12-201ENST00000343575 ZBTB47Q9UFB7 747 aaPredicted RBP18.42■□□□□ 0.54
CXCL12-201ENST00000343575 UTYO14607 1347 aa18.42■□□□□ 0.54
CXCL12-201ENST00000343575 CNTNAP4Q9C0A0 1308 aa18.42■□□□□ 0.54
CXCL12-201ENST00000343575 GCKRQ14397 625 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 HLFQ16534 295 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 SKAP1Q86WV1 359 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 PROM2Q8N271 834 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 ANKRD44Q8N8A2 993 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 RWDD1Q9H446 243 aaPredicted RBP18.41■□□□□ 0.54
CXCL12-201ENST00000343575 MAP3K15Q6ZN16 1313 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 GNAI2P04899 355 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 NEXNQ0ZGT2 675 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 AMIGO3Q86WK7 504 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 TBC1D2BQ9UPU7 963 aa18.41■□□□□ 0.54
CXCL12-201ENST00000343575 LRRFIP2Q9Y608 721 aaKnown RBP18.41■□□□□ 0.54
CXCL12-201ENST00000343575 RC3H1Q5TC82 1133 aaKnown RBP18.4■□□□□ 0.54
CXCL12-201ENST00000343575 SMIM5Q71RC9 77 aa18.4■□□□□ 0.54
CXCL12-201ENST00000343575 GRM8O00222 908 aa18.39■□□□□ 0.54
CXCL12-201ENST00000343575 UBTFL1P0CB47 393 aaPredicted RBP18.39■□□□□ 0.54
CXCL12-201ENST00000343575 DZIP3Q86Y13 1208 aaKnown RBP18.39■□□□□ 0.54
CXCL12-201ENST00000343575 RPAP2Q8IXW5 612 aaPredicted RBP18.39■□□□□ 0.54
CXCL12-201ENST00000343575 KAZALD1Q96I82 304 aa18.39■□□□□ 0.54
CXCL12-201ENST00000343575 ISCA1Q9BUE6 129 aa18.39■□□□□ 0.54
CXCL12-201ENST00000343575 TCIRG1Q13488 830 aa18.39■□□□□ 0.53
CXCL12-201ENST00000343575 GIGYF2Q6Y7W6 1299 aaKnown RBP18.39■□□□□ 0.53
CXCL12-201ENST00000343575 KIF6Q6ZMV9 814 aa18.39■□□□□ 0.53
CXCL12-201ENST00000343575 AFDNP55196 1824 aaKnown RBP18.38■□□□□ 0.53
CXCL12-201ENST00000343575 SMC5Q8IY18 1101 aa18.38■□□□□ 0.53
CXCL12-201ENST00000343575 C9orf78Q9NZ63 289 aaPredicted RBP18.38■□□□□ 0.53
CXCL12-201ENST00000343575 COL15A1P39059 1388 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 ERVV-1B6SEH8 477 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 CASP7P55210 303 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 NUP98P52948 1817 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 PNMA6EA0A0J9YXQ4 647 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 CAMTA2O94983 1202 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 TRIM28Q13263 835 aaKnown RBP18.37■□□□□ 0.53
CXCL12-201ENST00000343575 JARID2Q92833 1246 aaPredicted RBP18.37■□□□□ 0.53
CXCL12-201ENST00000343575 ARXQ96QS3 562 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 C4BP0C0L5 1744 aa18.37■□□□□ 0.53
CXCL12-201ENST00000343575 TNS1Q9HBL0 1735 aaKnown RBP18.36■□□□□ 0.53
CXCL12-201ENST00000343575 PLSCR1O15162 318 aa18.36■□□□□ 0.53
CXCL12-201ENST00000343575 RPS6KA4O75676 772 aa18.36■□□□□ 0.53
CXCL12-201ENST00000343575 ATP8B2P98198 1209 aa18.36■□□□□ 0.53
CXCL12-201ENST00000343575 SUCLG2Q96I99 432 aa18.36■□□□□ 0.53
CXCL12-201ENST00000343575 TXNRD1Q16881 649 aa18.35■□□□□ 0.53
CXCL12-201ENST00000343575 SLC27A3Q5K4L6 730 aa18.35■□□□□ 0.53
CXCL12-201ENST00000343575 H7C1W4 665 aa18.35■□□□□ 0.53
CXCL12-201ENST00000343575 CCDC191Q8NCU4 936 aa18.35■□□□□ 0.53
CXCL12-201ENST00000343575 A0A087WZG4 1122 aa18.34■□□□□ 0.53
CXCL12-201ENST00000343575 APBA3O96018 575 aa18.34■□□□□ 0.53
CXCL12-201ENST00000343575 EPHA10Q5JZY3 1008 aa18.34■□□□□ 0.53
CXCL12-201ENST00000343575 DCTPP1Q9H773 170 aa18.34■□□□□ 0.53
CXCL12-201ENST00000343575 CWC25Q9NXE8 425 aaPredicted RBP18.34■□□□□ 0.53
CXCL12-201ENST00000343575 GNPATO15228 680 aa18.33■□□□□ 0.53
CXCL12-201ENST00000343575 UBE3BQ7Z3V4 1068 aa18.33■□□□□ 0.53
CXCL12-201ENST00000343575 ZNF34Q8IZ26 560 aa18.33■□□□□ 0.53
CXCL12-201ENST00000343575 ANKRD36CQ5JPF3 1778 aa18.33■□□□□ 0.53
CXCL12-201ENST00000343575 MTX1Q13505 466 aa18.33■□□□□ 0.52
CXCL12-201ENST00000343575 NBR1Q14596 966 aa18.33■□□□□ 0.52
CXCL12-201ENST00000343575 SSH3Q8TE77 659 aa18.33■□□□□ 0.52
CXCL12-201ENST00000343575 PDZRN3Q9UPQ7 1066 aa18.33■□□□□ 0.52
CXCL12-201ENST00000343575 UBN2Q6ZU65 1347 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms