RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DDX19BQ9UMR2 479 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 GJA3Q9Y6H8 435 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 CDK12Q9NYV4 1490 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 SUPT20HQ8NEM7 779 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 SUDS3Q9H7L9 328 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 ZBED9Q6R2W3 1325 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 IMMTQ16891 758 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 EHBP1Q8NDI1 1231 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 FERMT1Q9BQL6 677 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 NYXQ9GZU5 481 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 NOD1Q9Y239 953 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 GLRX3O76003 335 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 SH2D4BQ5SQS7 431 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 RIC3Q7Z5B4 369 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 TEX2Q8IWB9 1127 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 ADGRB2O60241 1585 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 USO1O60763 962 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 APPP05067 770 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 TRIM29Q14134 588 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 SECISBP2LQ93073 1101 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 NBPF3Q9H094 633 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 CALCOCO1Q9P1Z2 691 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC39Q9UFE4 941 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 DNAJC21Q5F1R6 531 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 SETDB2Q96T68 719 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 FAM177BA6PVY3 158 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 IGHMBP2P38935 993 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 DCPSQ96C86 337 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ERC2O15083 957 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ABCC5O15440 1437 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 PIK3C2GO75747 1445 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 KIF4AO95239 1232 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 AIMP1Q12904 312 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 TNIP1Q15025 636 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ODF2Q5BJF6 829 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 MTIF3Q9H2K0 278 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ST20-MTHFSA0A0A6YYL1 179 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 TMCO5BA8MYB1 307 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 PPFIA3O75145 1194 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 MTHFSP49914 203 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 STIM1Q13586 685 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 GSE1Q14687 1217 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 HSP90AB3PQ58FF7 597 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 DDX46Q7L014 1031 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 SCLT1Q96NL6 688 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 TAOK3Q9H2K8 898 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 SEPT11Q9NVA2 429 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ATP2B2Q01814 1243 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 FILIP1LQ4L180 1135 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 KRT28Q7Z3Y7 464 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 RBM28Q9NW13 759 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 BCS1LQ9Y276 419 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 RABGAP1Q9Y3P9 1069 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC196A0A1B0GTZ2 297 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 ERICH4A6NGS2 130 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 TRDNQ13061 729 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC91Q7Z6B0 441 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 KIAA1328Q86T90 577 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 SREK1Q8WXA9 508 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 DNAJC2Q99543 621 aaKnown RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 GPHNQ9NQX3 736 aaPredicted RBP3.84□□□□□ -1.79
CSMD3-202ENST00000339701 STK24Q9Y6E0 443 aa3.84□□□□□ -1.79
CSMD3-202ENST00000339701 GPATCH8Q9UKJ3 1502 aaKnown RBP3.84□□□□□ -1.8
CSMD3-202ENST00000339701 CHMP4BP1P59074 171 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 NUTM1Q86Y26 1132 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 LRRC45Q96CN5 670 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 SWAP70Q9UH65 585 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 TNRQ92752 1358 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 CBFA2T2O43439 604 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 SF3A1Q15459 793 aaKnown RBP3.84□□□□□ -1.8
CSMD3-202ENST00000339701 NUTM2GQ5VZR2 741 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 FAM43AQ8N2R8 423 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 CNNM1Q9NRU3 951 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 CDC42BPGQ6DT37 1551 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 MPRIPQ6WCQ1 1025 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 GABPB2Q8TAK5 448 aaPredicted RBP3.84□□□□□ -1.8
CSMD3-202ENST00000339701 TBC1D2BQ9UPU7 963 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 IVNS1ABPQ9Y6Y0 642 aa3.84□□□□□ -1.8
CSMD3-202ENST00000339701 CRACR2BQ8N4Y2 399 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 BBXQ8WY36 941 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 PPP2R3CQ969Q6 453 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SLKQ9H2G2 1235 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 MAP3K5Q99683 1374 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 FAM161AQ3B820 660 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 TTLL5Q6EMB2 1281 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CERS3Q8IU89 383 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SULF1Q8IWU6 871 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SRCIN1Q9C0H9 1055 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 NCKAP5LQ9HCH0 1330 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 DISP1Q96F81 1524 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 NUP153P49790 1475 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 VPS36Q86VN1 386 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SEC62Q99442 399 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 IVLP07476 585 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 U2AF1L5P0DN76 240 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 U2AF1Q01081 240 aaKnown RBP eCLIP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 NCBP1Q09161 790 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 TPD52L1Q16890 204 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms