RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 NPM1P06748 294 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 MCM6Q14566 821 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 RNF20Q5VTR2 975 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 N4BP2L2Q92802 583 aaPredicted RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 MIEF2Q96C03 454 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 DNAJC25Q9H1X3 360 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ATAD2Q6PL18 1390 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 DNM1Q05193 864 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF9Q3BBW0 867 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 WWC2Q6AWC2 1192 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 BICC1Q9H694 974 aaKnown RBP11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 PDE11AQ9HCR9 933 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 FAN1Q9Y2M0 1017 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ABCC5O15440 1437 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 KLHL33A6NCF5 533 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCT2P78371 535 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCZ1BP86790 482 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCZ1P86791 482 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 C11orf91Q3C1V1 193 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 ZC3H12AQ5D1E8 599 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 LRRC31Q6UY01 552 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 GBP6Q6ZN66 633 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 FAM177A1Q8N128 213 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 AKAP2Q9Y2D5 859 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 AP1G2O75843 785 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 IFIT2P09913 472 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CCNHP51946 323 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 EVCP57679 992 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 PLEKHM2Q8IWE5 1019 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 SIRT2Q8IXJ6 389 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 FBXW7Q969H0 707 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 CD248Q9HCU0 757 aa11.31□□□□□ -0.6
PTCHD4-201ENST00000339488 KIF2AO00139 706 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ERLIN2O94905 339 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 LIG1P18858 919 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NUTM2GQ5VZR2 741 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 CLIC6Q96NY7 704 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 DNAI1Q9UI46 699 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 GPRASP1Q5JY77 1395 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 RPAP1Q9BWH6 1393 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SDSP20132 328 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SSR1P43307 286 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ZRSR1Q15695 479 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF11Q86T75 865 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 L2HGDHQ9H9P8 463 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 SUGCTQ9HAC7 445 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 MIS18AQ9NYP9 233 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 CDC42BPAQ5VT25 1732 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ATP10AO60312 1499 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 PIK3C2GO75747 1445 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ANKRD50Q9ULJ7 1429 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 WDR33Q9C0J8 1336 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 FANCGO15287 622 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 URI1O94763 535 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 TBC1D8BQ0IIM8 1120 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 INTS3Q68E01 1043 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 FAM173BQ6P4H8 233 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF5PQ86XG9 351 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 ZSWIM4Q9H7M6 989 aa11.3□□□□□ -0.6
PTCHD4-201ENST00000339488 GPATCH8Q9UKJ3 1502 aaKnown RBP11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 AATKQ6ZMQ8 1374 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 MCM2P49736 904 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 HOMER1Q86YM7 354 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 EFCAB13Q8IY85 973 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 FUT8Q9BYC5 575 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 RPS6KL1Q9Y6S9 549 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 ELF1P32519 619 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 SCRN1Q12765 414 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CCDC93Q567U6 631 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 TTC22Q5TAA0 569 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 TSHZ3Q63HK5 1081 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 PPP1R13BQ96KQ4 1090 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 PICK1Q9NRD5 415 aa11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CFAP65Q6ZU64 1925 aaKnown RBP11.29□□□□□ -0.6
PTCHD4-201ENST00000339488 CPP00450 1065 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 SNX1Q13596 522 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 GNL3LQ9NVN8 582 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 RBM28Q9NW13 759 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 ZNF777Q9ULD5 760 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 TADA3O75528 432 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 CLSTN1O94985 981 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 MAP3K11Q16584 847 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 E4F1Q66K89 784 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 TERF2IPQ9NYB0 399 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 NUP155O75694 1391 aa11.28□□□□□ -0.6
PTCHD4-201ENST00000339488 ITSN2Q9NZM3 1697 aa11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 BIN2Q9UBW5 565 aaPredicted RBP11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.6
PTCHD4-201ENST00000339488 PEX19P40855 299 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 ZNF165P49910 485 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 CUL4AQ13619 759 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 TBC1D22AQ8WUA7 517 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 NUP62CLQ9H1M0 184 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PSD3Q9NYI0 1048 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 CDC42BPBQ9Y5S2 1711 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PRAG1Q86YV5 1406 aa11.27□□□□□ -0.61
PTCHD4-201ENST00000339488 PSMD2Q13200 908 aa11.26□□□□□ -0.61
PTCHD4-201ENST00000339488 TMEM87AQ8NBN3 555 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms