RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 ARHGAP25P42331 645 aa7.09□□□□□ -1.28
CSMD1-201ENST00000335551 KLHL34Q8N239 644 aa7.09□□□□□ -1.28
CSMD1-201ENST00000335551 CTAGE1Q96RT6 745 aa7.09□□□□□ -1.28
CSMD1-201ENST00000335551 KANK4Q5T7N3 995 aaPredicted RBP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 PHLDB2Q86SQ0 1253 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 KDM4AO75164 1064 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 GMNNO75496 209 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 KLHL10Q6JEL2 608 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 USP25Q9UHP3 1055 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 MTMR7Q9Y216 660 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC38Q502W7 563 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 CPLX4Q7Z7G2 160 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 MYCBPQ99417 103 aaPredicted RBP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 RFC1P35251 1148 aaPredicted RBP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 LRCH2Q5VUJ6 765 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 TRIM7Q9C029 511 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 SSX2IPQ9Y2D8 614 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 PPFIA2O75334 1257 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 MAP2K2P36507 400 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 ATP5DP30049 168 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 PPP4R3AQ6IN85 833 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 MVPQ14764 893 aaKnown RBP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 KANK3Q6NY19 840 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 JPH4Q96JJ6 628 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.08□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC196A0A1B0GTZ2 297 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 MAP7Q14244 749 aa7.08□□□□□ -1.28
CSMD1-201ENST00000335551 TMEM266Q2M3C6 531 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 KIF6Q6ZMV9 814 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 APBB1IPQ7Z5R6 666 aaPredicted RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 C10orf67Q8IYJ2 551 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 TTC21AQ8NDW8 1320 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 FANCD2Q9BXW9 1451 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 GABPB1Q06547 395 aaPredicted RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 TRAK1Q9UPV9 953 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 RPGRIP1LQ68CZ1 1315 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 UBE2HP62256 183 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 NUF2Q9BZD4 464 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 FYCO1Q9BQS8 1478 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 DNA2P51530 1060 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 PTPRGP23470 1445 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 PSMC4P43686 418 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 RBBP5Q15291 538 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 TSPYL2Q9H2G4 693 aaPredicted RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 PRPF4BQ13523 1007 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 ERCC6LQ2NKX8 1250 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 TNPO1Q92973 898 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 SLU7O95391 586 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 TDRD12Q587J7 1177 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 ZMAT2Q96NC0 199 aaKnown RBP7.07□□□□□ -1.28
CSMD1-201ENST00000335551 VPS18Q9P253 973 aa7.07□□□□□ -1.28
CSMD1-201ENST00000335551 PRC1O43663 620 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 VAV2P52735 878 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC96Q2M329 555 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 GAS2L2Q8NHY3 880 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 MTIF2P46199 727 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 STAC3Q96MF2 364 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 NOB1Q9ULX3 412 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 AP1ARQ63HQ0 302 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 INTS8Q75QN2 995 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 ARHGAP24Q8N264 748 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 KIAA1524Q8TCG1 905 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 PIBF1Q8WXW3 757 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 VCX3AQ9NNX9 186 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 FHOD3Q2V2M9 1422 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 ATP2A2P16615 1042 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 ZNF76P36508 570 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 NOP2P46087 812 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 TBC1D5Q92609 795 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 TSGA10Q9BZW7 698 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 STRN4Q9NRL3 753 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 LUC7L3O95232 432 aaKnown RBP7.06□□□□□ -1.28
CSMD1-201ENST00000335551 NBPF8Q3BBV2 869 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 PLCD3Q8N3E9 789 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 SMC1BQ8NDV3 1235 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 ZNF287Q9HBT7 754 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 KIF21BO75037 1637 aa7.06□□□□□ -1.28
CSMD1-201ENST00000335551 ZNF165P49910 485 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 AFAP1L1Q8TED9 768 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 NOLC1Q14978 699 aaKnown RBP eCLIP7.05□□□□□ -1.28
CSMD1-201ENST00000335551 KLHL40Q2TBA0 621 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 AKAP2Q9Y2D5 859 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 INPP5BP32019 993 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 STXBP4Q6ZWJ1 553 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 WDR63Q8IWG1 891 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 FERMT2Q96AC1 680 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 C8orf76Q96K31 380 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 A0A087WZG4 1122 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CYLC1P35663 651 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-201ENST00000335551 ZSCAN23Q3MJ62 389 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 SKILP12757 684 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 OSCARQ8IYS5 282 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CNNM3Q8NE01 707 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 ZNF428Q96B54 188 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC14Q49A88 953 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 AACSQ86V21 672 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 RMND1Q9NWS8 449 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 TTC36A6NLP5 189 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 TRPC3Q13507 836 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms