RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ZNF830Q96NB3 372 aaPredicted RBP29.36■■■□□ 2.29
SPTSSA-201ENST00000298130 SMC3Q9UQE7 1217 aa29.36■■■□□ 2.29
SPTSSA-201ENST00000298130 STX6O43752 255 aa29.36■■■□□ 2.29
SPTSSA-201ENST00000298130 IFIT2P09913 472 aaKnown RBP29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 ZKSCAN5Q9Y2L8 839 aa29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 ZSCAN22P10073 491 aaPredicted RBP29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 JARID2Q92833 1246 aaPredicted RBP29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 FAM227BQ96M60 508 aa29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 MARF1Q9Y4F3 1742 aaKnown RBP29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 GLRX3O76003 335 aaKnown RBP29.35■■■□□ 2.29
SPTSSA-201ENST00000298130 SLIT1O75093 1534 aa29.34■■■□□ 2.29
SPTSSA-201ENST00000298130 TLR7Q9NYK1 1049 aaKnown RBP29.34■■■□□ 2.29
SPTSSA-201ENST00000298130 DBF4Q9UBU7 674 aaPredicted RBP29.34■■■□□ 2.29
SPTSSA-201ENST00000298130 SYAP1Q96A49 352 aaPredicted RBP29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 USP25Q9UHP3 1055 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 AKAP4Q5JQC9 854 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 IL17RAQ96F46 866 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 ORAI2Q96SN7 254 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 ECHDC1Q9NTX5 307 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 HYPKQ9NX55 129 aa29.33■■■□□ 2.29
SPTSSA-201ENST00000298130 RNMTO43148 476 aaKnown RBP29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 GJB2P29033 226 aa29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 HCLS1P14317 486 aaPredicted RBP29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 PLCB2Q00722 1185 aa29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 C1orf141Q5JVX7 400 aa29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 PDRG1Q9NUG6 133 aa29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 ANKARQ7Z5J8 1434 aa29.32■■■□□ 2.28
SPTSSA-201ENST00000298130 DNM1Q05193 864 aaKnown RBP29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 SLC39A6Q13433 755 aa29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 PLEKHO1Q53GL0 409 aaPredicted RBP29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 PDZRN4Q6ZMN7 1036 aaPredicted RBP29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 SUCLG2Q96I99 432 aa29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 CHMP3Q9Y3E7 222 aa29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 GIGYF1O75420 1035 aaPredicted RBP29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 KCNJ4P48050 445 aa29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 PIP4K2AP48426 406 aaPredicted RBP29.31■■■□□ 2.28
SPTSSA-201ENST00000298130 VPS37CA5D8V6 355 aaPredicted RBP29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 HS1BP3Q53T59 392 aa29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 PXDNQ92626 1479 aa29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 HSP90AB4PQ58FF6 505 aa29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 BOLA2Q9H3K6 86 aa29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 F13A1P00488 732 aa29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 BICC1Q9H694 974 aaKnown RBP29.3■■■□□ 2.28
SPTSSA-201ENST00000298130 TPM2P07951 284 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 FAM173BQ6P4H8 233 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 EAF2Q96CJ1 260 aaPredicted RBP29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 TAF6LQ9Y6J9 622 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 GIMAP6Q6P9H5 292 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 KAZALD1Q96I82 304 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 AXIN2Q9Y2T1 843 aa29.29■■■□□ 2.28
SPTSSA-201ENST00000298130 MYL6BP14649 208 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 ST3GAL1Q11201 340 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 FERMT3Q86UX7 667 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 CCDC39Q9UFE4 941 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 ZSCAN21Q9Y5A6 473 aaPredicted RBP29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 ZNF500O60304 480 aaPredicted RBP29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 SASH1O94885 1247 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 KSR2Q6VAB6 950 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 EDC3Q96F86 508 aaKnown RBP29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 CACNA1FO60840 1977 aa29.28■■■□□ 2.28
SPTSSA-201ENST00000298130 TTC41PQ6P2S7 1318 aa29.27■■■□□ 2.28
SPTSSA-201ENST00000298130 GCP02774 474 aa29.27■■■□□ 2.28
SPTSSA-201ENST00000298130 ME3Q16798 604 aa29.27■■■□□ 2.28
SPTSSA-201ENST00000298130 RRP9O43818 475 aaKnown RBP29.27■■■□□ 2.28
SPTSSA-201ENST00000298130 NDUFB9Q9Y6M9 179 aa29.27■■■□□ 2.28
SPTSSA-201ENST00000298130 NMIQ13287 307 aaPredicted RBP29.26■■■□□ 2.28
SPTSSA-201ENST00000298130 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.26■■■□□ 2.28
SPTSSA-201ENST00000298130 C17orf53Q8N3J3 647 aaPredicted RBP29.26■■■□□ 2.27
SPTSSA-201ENST00000298130 ANKRD24Q8TF21 1146 aa29.26■■■□□ 2.27
SPTSSA-201ENST00000298130 RBM8AQ9Y5S9 174 aaKnown RBP29.26■■■□□ 2.27
SPTSSA-201ENST00000298130 LTN1O94822 1766 aa29.26■■■□□ 2.27
SPTSSA-201ENST00000298130 RGPD2P0DJD1 1756 aa29.26■■■□□ 2.27
SPTSSA-201ENST00000298130 HOXB7P09629 217 aa29.25■■■□□ 2.27
SPTSSA-201ENST00000298130 ARID3AQ99856 593 aa29.25■■■□□ 2.27
SPTSSA-201ENST00000298130 RUFY2Q8WXA3 655 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 CYP46A1Q9Y6A2 500 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 CHGBP05060 677 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 CCDC183Q5T5S1 534 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 MTMR6Q9Y217 621 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 FAM13BQ9NYF5 915 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 TPCN1Q9ULQ1 816 aa29.24■■■□□ 2.27
SPTSSA-201ENST00000298130 CCDC9Q9Y3X0 531 aaKnown RBP29.23■■■□□ 2.27
SPTSSA-201ENST00000298130 A0A0D9SFI3 127 aa29.23■■■□□ 2.27
SPTSSA-201ENST00000298130 GRM8O00222 908 aa29.23■■■□□ 2.27
SPTSSA-201ENST00000298130 PHF14O94880 888 aa29.23■■■□□ 2.27
SPTSSA-201ENST00000298130 G3BP1Q13283 466 aaKnown RBP eCLIP29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 MTX1Q13505 466 aa29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 CREB3L3Q68CJ9 461 aa29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 TTC12Q9H892 705 aaPredicted RBP29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 CCDC171Q6TFL3 1326 aa29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 USP42Q9H9J4 1324 aaKnown RBP29.22■■■□□ 2.27
SPTSSA-201ENST00000298130 EPB41L2O43491 1005 aaKnown RBP29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 STK3Q13188 491 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 NECTIN1Q15223 517 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 GPATCH3Q96I76 525 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 ZC3H6P61129 1189 aaKnown RBP29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 UBE2HP62256 183 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 KCNH5Q8NCM2 988 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 ZSWIM6Q9HCJ5 1215 aa29.21■■■□□ 2.27
SPTSSA-201ENST00000298130 UQCRHLA0A096LP55 91 aa29.2■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms