RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 ANXA1P04083 346 aa17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 CCDC186Q7Z3E2 898 aa17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 TICAM2Q86XR7 235 aa17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 PRIMPOLQ96LW4 560 aa17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 GOLIM4O00461 696 aa17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 DNM1Q05193 864 aaKnown RBP17.79■□□□□ 0.44
SHROOM4-201ENST00000289292 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 GBP3Q9H0R5 595 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 CCDC178Q5BJE1 867 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 RNF187Q5TA31 235 aaPredicted RBP17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 TXLNBQ8N3L3 684 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 PDIA4P13667 645 aaKnown RBP17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 RAB3GAP1Q15042 981 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 ZNF213O14771 459 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 CUL7Q14999 1698 aa17.78■□□□□ 0.44
SHROOM4-201ENST00000289292 GOLGA8AA7E2F4 631 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 SSRP1Q08945 709 aaKnown RBP17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 RNF216Q9NWF9 866 aaPredicted RBP17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 SLC12A7Q9Y666 1083 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 ASXL1Q8IXJ9 1541 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 THOC2Q8NI27 1593 aaKnown RBP17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 DNAJC25Q9H1X3 360 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 GOPCQ9HD26 462 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 GSDMDP57764 484 aa17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 BBXQ8WY36 941 aaPredicted RBP17.77■□□□□ 0.44
SHROOM4-201ENST00000289292 LARP1Q6PKG0 1096 aaKnown RBP17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 SNRKQ9NRH2 765 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 ZKSCAN5Q9Y2L8 839 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 ECHDC1Q9NTX5 307 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 ESYT1Q9BSJ8 1104 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 NAPBQ9H115 298 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 SLC4A8Q2Y0W8 1093 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 NEK1Q96PY6 1258 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 CCDC12Q8WUD4 166 aaPredicted RBP17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 TIGD1Q96MW7 591 aa17.76■□□□□ 0.43
SHROOM4-201ENST00000289292 NEMFO60524 1076 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 GNG11P61952 73 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 SNX21Q969T3 373 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 HMGB1P09429 215 aaKnown RBP17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 SSR1P43307 286 aaKnown RBP17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 USP16Q9Y5T5 823 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 MAP9Q49MG5 647 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 MRPL50Q8N5N7 158 aaKnown RBP17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 PAXBP1Q9Y5B6 917 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 C8orf58Q8NAV2 365 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 CNKSR2Q8WXI2 1034 aa17.75■□□□□ 0.43
SHROOM4-201ENST00000289292 MATR3P43243 847 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 RBM5P52756 815 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 PDE1AP54750 535 aa17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 RANBP6O60518 1105 aaKnown RBP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 CACNA2D4Q7Z3S7 1137 aa17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 BMP2KQ9NSY1 1161 aaPredicted RBP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 IFIT3O14879 490 aaKnown RBP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 SKILP12757 684 aa17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 DHX29Q7Z478 1369 aaKnown RBP17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 ATP5J2-PTCD1G3V325 749 aa17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 AOPEPQ8N6M6 819 aa17.74■□□□□ 0.43
SHROOM4-201ENST00000289292 FKBP15Q5T1M5 1219 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 SRRTQ9BXP5 876 aaKnown RBP17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 RALGAPBQ86X10 1494 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 PTGS1P23219 599 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 CTR9Q6PD62 1173 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 DACT1Q9NYF0 836 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 PARD3Q8TEW0 1356 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 AKAP2Q9Y2D5 859 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 PI4KAP2A4QPH2 592 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 MICU3Q86XE3 530 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 PI4KAP1Q8N8J0 262 aa17.73■□□□□ 0.43
SHROOM4-201ENST00000289292 BMS1Q14692 1282 aaKnown RBP17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 DYDC1Q8WWB3 177 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 UBA5Q9GZZ9 404 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 MPHOSPH10O00566 681 aaKnown RBP17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 F13A1P00488 732 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 IGHMBP2P38935 993 aaKnown RBP17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 LUZP1Q86V48 1076 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 KRT222Q8N1A0 295 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 ZNF76P36508 570 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 ORC3Q9UBD5 711 aaPredicted RBP17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 DNAI1Q9UI46 699 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 YEATS4O95619 227 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 TDRD12Q587J7 1177 aaKnown RBP17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 BRF1Q92994 677 aa17.72■□□□□ 0.43
SHROOM4-201ENST00000289292 RHPN1Q8TCX5 695 aa17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 A0A087WZG4 1122 aa17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 DDX46Q7L014 1031 aaKnown RBP17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 ZRSR2Q15696 482 aaKnown RBP17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 CCDC150Q8NCX0 1101 aa17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 SMARCC1Q92922 1105 aaPredicted RBP17.71■□□□□ 0.43
SHROOM4-201ENST00000289292 UBASH3AP57075 661 aa17.71■□□□□ 0.42
SHROOM4-201ENST00000289292 FBXO31Q5XUX0 539 aaPredicted RBP17.71■□□□□ 0.42
SHROOM4-201ENST00000289292 CCDC94Q9BW85 323 aaPredicted RBP17.71■□□□□ 0.42
SHROOM4-201ENST00000289292 SLC26A6Q9BXS9 759 aa17.71■□□□□ 0.42
SHROOM4-201ENST00000289292 KIAA0586Q9BVV6 1533 aa17.7■□□□□ 0.42
SHROOM4-201ENST00000289292 CCDC171Q6TFL3 1326 aa17.7■□□□□ 0.42
SHROOM4-201ENST00000289292 MAP2K1Q02750 393 aaPredicted RBP17.7■□□□□ 0.42
SHROOM4-201ENST00000289292 RBSNQ9H1K0 784 aa17.7■□□□□ 0.42
SHROOM4-201ENST00000289292 SMC5Q8IY18 1101 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms