RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 TWISTNBQ3B726 338 aaPredicted RBP8.42□□□□□ -1.06
CD44-204ENST00000279452 TBC1D9BQ66K14 1250 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 TTLL7Q6ZT98 887 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 TSPYL6Q8N831 410 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 NLGN2Q8NFZ4 835 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 XAGE3Q8WTP9 111 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 SETDB2Q96T68 719 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 STK31Q9BXU1 1019 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 BCL2L12Q9HB09 334 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 DBF4Q9UBU7 674 aaPredicted RBP8.42□□□□□ -1.06
CD44-204ENST00000279452 CARMIL3Q8ND23 1372 aa8.42□□□□□ -1.06
CD44-204ENST00000279452 MAP3K15Q6ZN16 1313 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 POLRMTO00411 1230 aaKnown RBP8.41□□□□□ -1.06
CD44-204ENST00000279452 SERPINB2P05120 415 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 GPTP24298 496 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 GTF2E1P29083 439 aaPredicted RBP8.41□□□□□ -1.06
CD44-204ENST00000279452 CCDC30Q5VVM6 783 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 COPS6Q7L5N1 327 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 CHMP4AQ9BY43 222 aa8.41□□□□□ -1.06
CD44-204ENST00000279452 DDX21Q9NR30 783 aaKnown RBP eCLIP8.41□□□□□ -1.06
CD44-204ENST00000279452 NIP7Q9Y221 180 aaKnown RBP eCLIP8.41□□□□□ -1.06
CD44-204ENST00000279452 E9PSI1 815 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 ST5P78524 1137 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 HLFQ16534 295 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 GPR162Q16538 588 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 NBPF5PQ86XG9 351 aaPredicted RBP8.4□□□□□ -1.06
CD44-204ENST00000279452 CCDC24Q8N4L8 307 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 CNBD1Q8NA66 436 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 SPINK5Q9NQ38 1064 aaPredicted RBP8.4□□□□□ -1.06
CD44-204ENST00000279452 HYPKQ9NX55 129 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 CD2APQ9Y5K6 639 aa8.4□□□□□ -1.06
CD44-204ENST00000279452 BCORQ6W2J9 1755 aa8.4□□□□□ -1.07
CD44-204ENST00000279452 C10orf71Q711Q0 1435 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 ERVV-1B6SEH8 477 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 TM4SF1P30408 202 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 PDIA6Q15084 440 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 CLEC4GQ6UXB4 293 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 RIC3Q7Z5B4 369 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 CNKSR2Q8WXI2 1034 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 ZNF428Q96B54 188 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 COL24A1Q17RW2 1714 aa8.39□□□□□ -1.07
CD44-204ENST00000279452 ZNF521Q96K83 1311 aa8.38□□□□□ -1.07
CD44-204ENST00000279452 DDX58O95786 925 aaKnown RBP8.38□□□□□ -1.07
CD44-204ENST00000279452 HOXD11P31277 338 aaPredicted RBP8.38□□□□□ -1.07
CD44-204ENST00000279452 HSP90AB3PQ58FF7 597 aa8.38□□□□□ -1.07
CD44-204ENST00000279452 CDCA7LQ96GN5 454 aa8.38□□□□□ -1.07
CD44-204ENST00000279452 PHAXQ9H814 394 aaKnown RBP8.38□□□□□ -1.07
CD44-204ENST00000279452 ATP10DQ9P241 1426 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 A0A0G2JLW4 131 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 SLC4A2P04920 1241 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 DPEP1P16444 411 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 CHRNA5P30532 468 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 TGFB2P61812 414 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 SLFN5Q08AF3 891 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 PRR5LQ6MZQ0 368 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 TPTE2Q6XPS3 522 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 GIGYF2Q6Y7W6 1299 aaKnown RBP8.37□□□□□ -1.07
CD44-204ENST00000279452 ANKRD13DQ6ZTN6 518 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 C2CD5Q86YS7 1000 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 PLBD2Q8NHP8 589 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 NYXQ9GZU5 481 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 BCS1LQ9Y276 419 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 PXDNLA1KZ92 1463 aa8.37□□□□□ -1.07
CD44-204ENST00000279452 ATP5J2-PTCD1G3V325 749 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 RGL2O15211 777 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 PDE6BP35913 854 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 FKBP5Q13451 457 aaPredicted RBP8.36□□□□□ -1.07
CD44-204ENST00000279452 LRP10Q7Z4F1 713 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 PPP1R42Q7Z4L9 355 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 NUTM1Q86Y26 1132 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 ZNF622Q969S3 477 aaKnown RBP eCLIP8.36□□□□□ -1.07
CD44-204ENST00000279452 MYD88Q99836 296 aa8.36□□□□□ -1.07
CD44-204ENST00000279452 UBN2Q6ZU65 1347 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 H0YIN7 160 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 VAMP4O75379 141 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 NEXNQ0ZGT2 675 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 FLIIQ13045 1269 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 ERFEQ4G0M1 354 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 PARP10Q53GL7 1025 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 RTL5Q5HYW3 569 aaPredicted RBP8.35□□□□□ -1.07
CD44-204ENST00000279452 SUSD4Q5VX71 490 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 G2E3Q7L622 706 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 YTHDC1Q96MU7 727 aaKnown RBP8.35□□□□□ -1.07
CD44-204ENST00000279452 UTP14AQ9BVJ6 771 aaKnown RBP8.35□□□□□ -1.07
CD44-204ENST00000279452 BCL2L13Q9BXK5 485 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 TRMT112Q9UI30 125 aaKnown RBP8.35□□□□□ -1.07
CD44-204ENST00000279452 MAP3K2Q9Y2U5 619 aa8.35□□□□□ -1.07
CD44-204ENST00000279452 PI4KAP2A4QPH2 592 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 YBX3P16989 372 aaKnown RBP eCLIP8.34□□□□□ -1.07
CD44-204ENST00000279452 TCIRG1Q13488 830 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 DALRD3Q5D0E6 543 aaKnown RBP8.34□□□□□ -1.07
CD44-204ENST00000279452 NLRP10Q86W26 655 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 ZNF34Q8IZ26 560 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 PI4KAP1Q8N8J0 262 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 BRIP1Q9BX63 1249 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 SMC4Q9NTJ3 1288 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 PIM2Q9P1W9 311 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 ZNF219Q9P2Y4 722 aaPredicted RBP8.34□□□□□ -1.07
CD44-204ENST00000279452 ABCC12Q96J65 1359 aa8.34□□□□□ -1.07
CD44-204ENST00000279452 N4BP2Q86UW6 1770 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms