RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 TTC21BQ7Z4L5 1316 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 KCNH5Q8NCM2 988 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 MAP3K12Q12852 859 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 KRT222Q8N1A0 295 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 FSIP1Q8NA03 581 aa9.19□□□□□ -0.94
LIMD1-201ENST00000273317 CCDC194A0A1B0GVG4 234 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 GON4LQ3T8J9 2241 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 PRPHP41219 470 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 METTL24Q5JXM2 366 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 ANKS4BQ8N8V4 417 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 MYL6BP14649 208 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 CAVIN4Q5BKX8 364 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 CEP135Q66GS9 1140 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 TXNDC2Q86VQ3 553 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 TNPO1Q92973 898 aaKnown RBP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 HSF2BPO75031 334 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 PPP4R3BQ5MIZ7 849 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 TOM1L2Q6ZVM7 507 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 TSNARE1Q96NA8 513 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 CFAP43Q8NDM7 1665 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 IDH1O75874 414 aaKnown RBP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 URI1O94763 535 aaPredicted RBP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 CALML4Q96GE6 196 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 IFIT1P09914 478 aaKnown RBP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 TIGD1Q96MW7 591 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 BMP2KLQ5H9B9 411 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 KLHL34Q8N239 644 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 EVI5LQ96CN4 794 aa9.18□□□□□ -0.94
LIMD1-201ENST00000273317 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.18□□□□□ -0.94
LIMD1-201ENST00000273317 FERP16591 822 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 DUSP27Q5VZP5 1158 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 C16orf45Q96MC5 204 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 CNNM3Q8NE01 707 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 ZSCAN16Q9H4T2 348 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 MAGI1Q96QZ7 1491 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 IL16Q14005 1332 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 BAG4O95429 457 aaKnown RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 KLHL10Q6JEL2 608 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 PROSER2Q86WR7 435 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 IQCA1Q86XH1 822 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 ASXL1Q8IXJ9 1541 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 SCAF11Q99590 1463 aaKnown RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 CFAP57Q96MR6 1250 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 PUS7Q96PZ0 661 aaKnown RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 IKBKGQ9Y6K9 419 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 STX6O43752 255 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 HSPA4P34932 840 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 TMC6Q7Z403 805 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 CDK13Q14004 1512 aaKnown RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 NBPF1Q3BBV0 1214 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 MAATS1Q7Z4T9 603 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 ERMNQ8TAM6 284 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 CTNNBL1Q8WYA6 563 aaPredicted RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 NAIPQ13075 1403 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 ADCY5O95622 1261 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 MTIF2P46199 727 aaKnown RBP9.17□□□□□ -0.94
LIMD1-201ENST00000273317 CCDC155Q8N6L0 562 aa9.17□□□□□ -0.94
LIMD1-201ENST00000273317 TTC14Q96N46 770 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 STRN4Q9NRL3 753 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 USP5P45974 858 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 DNAAF4Q8WXU2 420 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 TMX1Q9H3N1 280 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 CTNNA2P26232 953 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 TBC1D5Q92609 795 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 FAM177BA6PVY3 158 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 RARSP54136 660 aaKnown RBP9.16□□□□□ -0.94
LIMD1-201ENST00000273317 HLTFQ14527 1009 aaKnown RBP eCLIP9.16□□□□□ -0.94
LIMD1-201ENST00000273317 NUTM1Q86Y26 1132 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 FERMT2Q96AC1 680 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 TCP11L1Q9NUJ3 509 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 PIK3R4Q99570 1358 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 POLR3DP05423 398 aaPredicted RBP9.16□□□□□ -0.94
LIMD1-201ENST00000273317 KLHL40Q2TBA0 621 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 SLC12A5Q9H2X9 1139 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 OPA1O60313 960 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 XPCQ01831 940 aaPredicted RBP9.16□□□□□ -0.94
LIMD1-201ENST00000273317 HS1BP3Q53T59 392 aa9.16□□□□□ -0.94
LIMD1-201ENST00000273317 BIVM-ERCC5R4GMW8 1640 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 LRRC45Q96CN5 670 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 SPAG1Q07617 926 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 GRIPAP1Q4V328 841 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 PLCD3Q8N3E9 789 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 GOLGA8AA7E2F4 631 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 UBE4AQ14139 1066 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 CCDC40Q4G0X9 1142 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 DZIP1Q86YF9 867 aaKnown RBP9.15□□□□□ -0.94
LIMD1-201ENST00000273317 IFIT5Q13325 482 aaKnown RBP9.15□□□□□ -0.94
LIMD1-201ENST00000273317 SERPINA10Q9UK55 444 aa9.15□□□□□ -0.94
LIMD1-201ENST00000273317 CBX1P83916 185 aa9.15□□□□□ -0.95
LIMD1-201ENST00000273317 TAF7Q15545 349 aaPredicted RBP9.15□□□□□ -0.95
LIMD1-201ENST00000273317 SPTY2D1Q68D10 685 aaPredicted RBP9.15□□□□□ -0.95
LIMD1-201ENST00000273317 USP37Q86T82 979 aa9.15□□□□□ -0.95
LIMD1-201ENST00000273317 CFAP65Q6ZU64 1925 aaKnown RBP9.15□□□□□ -0.95
LIMD1-201ENST00000273317 TDRD12Q587J7 1177 aaKnown RBP9.14□□□□□ -0.95
LIMD1-201ENST00000273317 EXOC1Q9NV70 894 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 TUBBP07437 444 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 MSL1Q68DK7 614 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 FERMT3Q86UX7 667 aa9.14□□□□□ -0.95
LIMD1-201ENST00000273317 SSFA2P28290 1259 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 269.2 ms