RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 IL1RAPL2Q9NP60 686 aa20.48■□□□□ 0.87
CCDC40-201ENST00000269318 PTCD1O75127 700 aaKnown RBP20.48■□□□□ 0.87
CCDC40-201ENST00000269318 PLBD2Q8NHP8 589 aa20.48■□□□□ 0.87
CCDC40-201ENST00000269318 LRP6O75581 1613 aa20.47■□□□□ 0.87
CCDC40-201ENST00000269318 KIF2CQ99661 725 aa20.47■□□□□ 0.87
CCDC40-201ENST00000269318 BICC1Q9H694 974 aaKnown RBP20.47■□□□□ 0.87
CCDC40-201ENST00000269318 NRAPQ86VF7 1730 aa20.47■□□□□ 0.87
CCDC40-201ENST00000269318 PIGBQ92521 554 aa20.46■□□□□ 0.87
CCDC40-201ENST00000269318 A1BGP04217 495 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 ITGB4P16144 1822 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 COL15A1P39059 1388 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 NUP188Q5SRE5 1749 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 NBR1Q14596 966 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 CASC1Q6TDU7 716 aa20.45■□□□□ 0.86
CCDC40-201ENST00000269318 AFDNP55196 1824 aaKnown RBP20.44■□□□□ 0.86
CCDC40-201ENST00000269318 NUTM1Q86Y26 1132 aa20.44■□□□□ 0.86
CCDC40-201ENST00000269318 ASAP1Q9ULH1 1129 aa20.44■□□□□ 0.86
CCDC40-201ENST00000269318 ADAMTS2O95450 1211 aa20.43■□□□□ 0.86
CCDC40-201ENST00000269318 ATG3Q9NT62 314 aa20.43■□□□□ 0.86
CCDC40-201ENST00000269318 TTLL7Q6ZT98 887 aa20.43■□□□□ 0.86
CCDC40-201ENST00000269318 VSIG10Q8N0Z9 540 aa20.43■□□□□ 0.86
CCDC40-201ENST00000269318 PA2G4Q9UQ80 394 aaKnown RBP20.43■□□□□ 0.86
CCDC40-201ENST00000269318 BCL9O00512 1426 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 EXOC5O00471 708 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 TOM1O60784 492 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 EPHA10Q5JZY3 1008 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 PI4K2BQ8TCG2 481 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 USP26Q9BXU7 913 aa20.42■□□□□ 0.86
CCDC40-201ENST00000269318 USP42Q9H9J4 1324 aaKnown RBP20.42■□□□□ 0.86
CCDC40-201ENST00000269318 SPATA31A1Q5TZJ5 1347 aa20.41■□□□□ 0.86
CCDC40-201ENST00000269318 ERC1Q8IUD2 1116 aa20.41■□□□□ 0.86
CCDC40-201ENST00000269318 SNX21Q969T3 373 aa20.41■□□□□ 0.86
CCDC40-201ENST00000269318 ATP5J2-PTCD1G3V325 749 aa20.41■□□□□ 0.86
CCDC40-201ENST00000269318 CASP7P55210 303 aa20.41■□□□□ 0.86
CCDC40-201ENST00000269318 OS9Q13438 667 aaPredicted RBP20.41■□□□□ 0.86
CCDC40-201ENST00000269318 CDCA7Q9BWT1 371 aaPredicted RBP20.4■□□□□ 0.86
CCDC40-201ENST00000269318 THRAP3Q9Y2W1 955 aaKnown RBP20.4■□□□□ 0.86
CCDC40-201ENST00000269318 RABL6Q3YEC7 729 aaPredicted RBP20.39■□□□□ 0.86
CCDC40-201ENST00000269318 UNC5CLQ8IV45 518 aa20.39■□□□□ 0.86
CCDC40-201ENST00000269318 TEX13AQ9BXU3 409 aaPredicted RBP20.39■□□□□ 0.86
CCDC40-201ENST00000269318 ANTXR1Q9H6X2 564 aa20.39■□□□□ 0.86
CCDC40-201ENST00000269318 ERC2O15083 957 aa20.39■□□□□ 0.85
CCDC40-201ENST00000269318 PIP4K2BP78356 416 aa20.39■□□□□ 0.85
CCDC40-201ENST00000269318 UBE3BQ7Z3V4 1068 aa20.39■□□□□ 0.85
CCDC40-201ENST00000269318 A0A087WZG4 1122 aa20.38■□□□□ 0.85
CCDC40-201ENST00000269318 DNAJC10Q8IXB1 793 aa20.38■□□□□ 0.85
CCDC40-201ENST00000269318 CLASRPQ8N2M8 674 aaKnown RBP20.38■□□□□ 0.85
CCDC40-201ENST00000269318 SLIT2O94813 1529 aa20.38■□□□□ 0.85
CCDC40-201ENST00000269318 NWD2Q9ULI1 1742 aa20.38■□□□□ 0.85
CCDC40-201ENST00000269318 TTC41PQ6P2S7 1318 aa20.38■□□□□ 0.85
CCDC40-201ENST00000269318 TJP1Q07157 1748 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 SASH1O94885 1247 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 REC8O95072 547 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 JARID2Q92833 1246 aaPredicted RBP20.37■□□□□ 0.85
CCDC40-201ENST00000269318 TRIM6-TRIM34B2RNG4 842 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 H7C1W4 665 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 CHMLP26374 656 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 RILPL2Q969X0 211 aa20.37■□□□□ 0.85
CCDC40-201ENST00000269318 RFX5P48382 616 aaPredicted RBP20.36■□□□□ 0.85
CCDC40-201ENST00000269318 HSCBQ8IWL3 235 aa20.36■□□□□ 0.85
CCDC40-201ENST00000269318 ESYT1Q9BSJ8 1104 aa20.36■□□□□ 0.85
CCDC40-201ENST00000269318 SPATA31A5Q5VU36 1347 aa20.36■□□□□ 0.85
CCDC40-201ENST00000269318 SPATA31A7Q8IWB4 1347 aa20.36■□□□□ 0.85
CCDC40-201ENST00000269318 NUTM2BA6NNL0 878 aaPredicted RBP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 NUTM2EB1AL46 878 aaPredicted RBP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 G3BP1Q13283 466 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 NUTM2AQ8IVF1 878 aaPredicted RBP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 ZBTB3Q9H5J0 574 aa20.35■□□□□ 0.85
CCDC40-201ENST00000269318 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 DOT1LQ8TEK3 1739 aa20.35■□□□□ 0.85
CCDC40-201ENST00000269318 SLC4A9Q96Q91 983 aa20.35■□□□□ 0.85
CCDC40-201ENST00000269318 COPRSQ9NQ92 184 aa20.35■□□□□ 0.85
CCDC40-201ENST00000269318 CWC25Q9NXE8 425 aaPredicted RBP20.35■□□□□ 0.85
CCDC40-201ENST00000269318 STARD3NLO95772 234 aa20.34■□□□□ 0.85
CCDC40-201ENST00000269318 KLHDC4Q8TBB5 520 aa20.34■□□□□ 0.85
CCDC40-201ENST00000269318 RBM42Q9BTD8 480 aaKnown RBP20.34■□□□□ 0.85
CCDC40-201ENST00000269318 SLKQ9H2G2 1235 aaPredicted RBP20.34■□□□□ 0.85
CCDC40-201ENST00000269318 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.34■□□□□ 0.85
CCDC40-201ENST00000269318 CCDC191Q8NCU4 936 aa20.34■□□□□ 0.85
CCDC40-201ENST00000269318 GLRX3O76003 335 aaKnown RBP20.33■□□□□ 0.84
CCDC40-201ENST00000269318 DDB1Q16531 1140 aa20.33■□□□□ 0.84
CCDC40-201ENST00000269318 FOXO4P98177 505 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 PTPN12Q05209 780 aaKnown RBP20.32■□□□□ 0.84
CCDC40-201ENST00000269318 NFKBIBQ15653 356 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 ISCA1Q9BUE6 129 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 ECHDC1Q9NTX5 307 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 CD2BP2O95400 341 aaKnown RBP20.32■□□□□ 0.84
CCDC40-201ENST00000269318 IFIT2P09913 472 aaKnown RBP20.32■□□□□ 0.84
CCDC40-201ENST00000269318 PRIM1P49642 420 aaKnown RBP20.32■□□□□ 0.84
CCDC40-201ENST00000269318 BARGINQ6ZT62 677 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 AACSQ86V21 672 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 EAF2Q96CJ1 260 aaPredicted RBP20.32■□□□□ 0.84
CCDC40-201ENST00000269318 SIL1Q9H173 461 aa20.32■□□□□ 0.84
CCDC40-201ENST00000269318 CYP19A1P11511 503 aaPredicted RBP20.31■□□□□ 0.84
CCDC40-201ENST00000269318 RABEP1Q15276 862 aa20.31■□□□□ 0.84
CCDC40-201ENST00000269318 MAP4K4O95819 1239 aaPredicted RBP20.3■□□□□ 0.84
CCDC40-201ENST00000269318 SYTL4Q96C24 671 aaPredicted RBP20.3■□□□□ 0.84
CCDC40-201ENST00000269318 AK9Q5TCS8 1911 aa20.3■□□□□ 0.84
CCDC40-201ENST00000269318 UBAP1LF5GYI3 381 aa20.3■□□□□ 0.84
CCDC40-201ENST00000269318 TCIRG1Q13488 830 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms