RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MAP3K15Q6ZN16 1313 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 SLC4A2P04920 1241 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 POLD1P28340 1107 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 TM4SF1P30408 202 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 DDR1Q08345 913 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 NFIXQ14938 502 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 TBC1D9BQ66K14 1250 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 KIF6Q6ZMV9 814 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 BICDL1Q6ZP65 573 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 G2E3Q7L622 706 aa16.41■□□□□ 0.22
SS18-202ENST00000269138 YTHDC1Q96MU7 727 aaKnown RBP16.41■□□□□ 0.22
SS18-202ENST00000269138 STK31Q9BXU1 1019 aa16.4■□□□□ 0.22
SS18-202ENST00000269138 CHMP4AQ9BY43 222 aa16.4■□□□□ 0.22
SS18-202ENST00000269138 ERVV-1B6SEH8 477 aa16.4■□□□□ 0.22
SS18-202ENST00000269138 COL24A1Q17RW2 1714 aa16.39■□□□□ 0.22
SS18-202ENST00000269138 CLEC4GQ6UXB4 293 aa16.39■□□□□ 0.21
SS18-202ENST00000269138 SCN7AQ01118 1682 aa16.38■□□□□ 0.21
SS18-202ENST00000269138 POLRMTO00411 1230 aaKnown RBP16.38■□□□□ 0.21
SS18-202ENST00000269138 PPP1R1BQ9UD71 204 aaPredicted RBP16.38■□□□□ 0.21
SS18-202ENST00000269138 LRP5O75197 1615 aa16.37■□□□□ 0.21
SS18-202ENST00000269138 GIGYF2Q6Y7W6 1299 aaKnown RBP16.37■□□□□ 0.21
SS18-202ENST00000269138 ANKRD13DQ6ZTN6 518 aa16.37■□□□□ 0.21
SS18-202ENST00000269138 ZNF652Q9Y2D9 606 aa16.37■□□□□ 0.21
SS18-202ENST00000269138 PARP3Q9Y6F1 533 aa16.37■□□□□ 0.21
SS18-202ENST00000269138 BCORQ6W2J9 1755 aa16.37■□□□□ 0.21
SS18-202ENST00000269138 SRCAPQ6ZRS2 3230 aa16.36■□□□□ 0.21
SS18-202ENST00000269138 PLBD2Q8NHP8 589 aa16.36■□□□□ 0.21
SS18-202ENST00000269138 SSH1Q8WYL5 1049 aa16.36■□□□□ 0.21
SS18-202ENST00000269138 NIP7Q9Y221 180 aaKnown RBP eCLIP16.36■□□□□ 0.21
SS18-202ENST00000269138 RGL2O15211 777 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 SERPINB2P05120 415 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 GPTP24298 496 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 SETDB2Q96T68 719 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 BCL2L13Q9BXK5 485 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 FLIIQ13045 1269 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 RIC3Q7Z5B4 369 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 ZNF34Q8IZ26 560 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 KLHL34Q8N239 644 aa16.35■□□□□ 0.21
SS18-202ENST00000269138 MRPL50Q8N5N7 158 aaKnown RBP16.35■□□□□ 0.21
SS18-202ENST00000269138 FHDC1Q9C0D6 1143 aaPredicted RBP16.35■□□□□ 0.21
SS18-202ENST00000269138 FAM177BA6PVY3 158 aa16.34■□□□□ 0.21
SS18-202ENST00000269138 CT47B1P0C2W7 299 aaPredicted RBP16.34■□□□□ 0.21
SS18-202ENST00000269138 ZNF428Q96B54 188 aa16.34■□□□□ 0.21
SS18-202ENST00000269138 UBN2Q6ZU65 1347 aa16.33■□□□□ 0.2
SS18-202ENST00000269138 PI4KAP2A4QPH2 592 aa16.33■□□□□ 0.2
SS18-202ENST00000269138 TCIRG1Q13488 830 aa16.33■□□□□ 0.2
SS18-202ENST00000269138 CCDC24Q8N4L8 307 aa16.33■□□□□ 0.2
SS18-202ENST00000269138 PI4KAP1Q8N8J0 262 aa16.33■□□□□ 0.2
SS18-202ENST00000269138 ATP10DQ9P241 1426 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 ATP5J2-PTCD1G3V325 749 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 DDX58O95786 925 aaKnown RBP16.32■□□□□ 0.2
SS18-202ENST00000269138 RARSP54136 660 aaKnown RBP16.32■□□□□ 0.2
SS18-202ENST00000269138 KSR2Q6VAB6 950 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 MAP3K2Q9Y2U5 619 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 ADCY9O60503 1353 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 CARMIL3Q8ND23 1372 aa16.32■□□□□ 0.2
SS18-202ENST00000269138 FKBP5Q13451 457 aaPredicted RBP16.31■□□□□ 0.2
SS18-202ENST00000269138 ALDH1L2Q3SY69 923 aa16.31■□□□□ 0.2
SS18-202ENST00000269138 SUSD4Q5VX71 490 aa16.31■□□□□ 0.2
SS18-202ENST00000269138 SMC4Q9NTJ3 1288 aa16.31■□□□□ 0.2
SS18-202ENST00000269138 NUP98P52948 1817 aa16.31■□□□□ 0.2
SS18-202ENST00000269138 HSP90AB3PQ58FF7 597 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 PRR5LQ6MZQ0 368 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 NBPF5PQ86XG9 351 aaPredicted RBP16.3■□□□□ 0.2
SS18-202ENST00000269138 NLGN2Q8NFZ4 835 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 MYD88Q99836 296 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 SYT17Q9BSW7 474 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 ISCA1Q9BUE6 129 aa16.3■□□□□ 0.2
SS18-202ENST00000269138 F6X3S4 739 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 NLRP10Q86W26 655 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 METTL22Q9BUU2 404 aaPredicted RBP16.29■□□□□ 0.2
SS18-202ENST00000269138 NUTM1Q86Y26 1132 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 CNBD1Q8NA66 436 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 CD2APQ9Y5K6 639 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 C10orf71Q711Q0 1435 aa16.29■□□□□ 0.2
SS18-202ENST00000269138 BCAR3O75815 825 aa16.28■□□□□ 0.2
SS18-202ENST00000269138 NTSR2O95665 410 aa16.28■□□□□ 0.2
SS18-202ENST00000269138 PARP10Q53GL7 1025 aa16.28■□□□□ 0.2
SS18-202ENST00000269138 TPTE2Q6XPS3 522 aa16.28■□□□□ 0.2
SS18-202ENST00000269138 AFDNP55196 1824 aaKnown RBP16.27■□□□□ 0.2
SS18-202ENST00000269138 NPHP1O15259 732 aa16.27■□□□□ 0.2
SS18-202ENST00000269138 IGKV5-2P06315 115 aa16.27■□□□□ 0.2
SS18-202ENST00000269138 ERFEQ4G0M1 354 aa16.27■□□□□ 0.2
SS18-202ENST00000269138 SYNE4Q8N205 404 aa16.27■□□□□ 0.2
SS18-202ENST00000269138 DNAAF4Q8WXU2 420 aa16.27■□□□□ 0.2
SS18-202ENST00000269138 UTP14AQ9BVJ6 771 aaKnown RBP16.27■□□□□ 0.2
SS18-202ENST00000269138 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
SS18-202ENST00000269138 NRXN2Q9P2S2 1712 aa16.26■□□□□ 0.19
SS18-202ENST00000269138 ARFGEF2Q9Y6D5 1785 aa16.26■□□□□ 0.19
SS18-202ENST00000269138 TRIM28Q13263 835 aaKnown RBP16.26■□□□□ 0.19
SS18-202ENST00000269138 PPP1R42Q7Z4L9 355 aa16.26■□□□□ 0.19
SS18-202ENST00000269138 A0A0G2JLW4 131 aa16.25■□□□□ 0.19
SS18-202ENST00000269138 GTF2E1P29083 439 aaPredicted RBP16.25■□□□□ 0.19
SS18-202ENST00000269138 BRPF1P55201 1214 aaPredicted RBP16.25■□□□□ 0.19
SS18-202ENST00000269138 CWF19L2Q2TBE0 894 aaKnown RBP16.25■□□□□ 0.19
SS18-202ENST00000269138 NYXQ9GZU5 481 aa16.25■□□□□ 0.19
SS18-202ENST00000269138 TRMT112Q9UI30 125 aaKnown RBP16.25■□□□□ 0.19
SS18-202ENST00000269138 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
SS18-202ENST00000269138 ABCC12Q96J65 1359 aa16.25■□□□□ 0.19
SS18-202ENST00000269138 DPEP1P16444 411 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms