RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 CAVIN4Q5BKX8 364 aa15.49■□□□□ 0.07
NEK4-201ENST00000233027 ZSWIM4Q9H7M6 989 aa15.49■□□□□ 0.07
NEK4-201ENST00000233027 ZNF165P49910 485 aa15.49■□□□□ 0.07
NEK4-201ENST00000233027 LRSAM1Q6UWE0 723 aa15.49■□□□□ 0.07
NEK4-201ENST00000233027 TDRD12Q587J7 1177 aaKnown RBP15.48■□□□□ 0.07
NEK4-201ENST00000233027 CTCFLQ8NI51 663 aaPredicted RBP15.48■□□□□ 0.07
NEK4-201ENST00000233027 TMOD3Q9NYL9 352 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 SLC4A8Q2Y0W8 1093 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 SNRKQ9NRH2 765 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 ECHDC1Q9NTX5 307 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 A0A087WZG4 1122 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 CCDC196A0A1B0GTZ2 297 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 MAP3K12Q12852 859 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 PPP1R42Q7Z4L9 355 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 USP16Q9Y5T5 823 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 MAGI1Q96QZ7 1491 aaPredicted RBP15.48■□□□□ 0.07
NEK4-201ENST00000233027 YEATS4O95619 227 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 MAP3K1Q13233 1512 aa15.48■□□□□ 0.07
NEK4-201ENST00000233027 SDSP20132 328 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 GSDMDP57764 484 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 RNF187Q5TA31 235 aaPredicted RBP15.47■□□□□ 0.07
NEK4-201ENST00000233027 PCDHB15Q9Y5E8 787 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 IFFO1Q0D2I5 559 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 PODXL2Q9NZ53 605 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 NEK1Q96PY6 1258 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 KIF14Q15058 1648 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 PPP1R12BO60237 982 aaPredicted RBP15.47■□□□□ 0.07
NEK4-201ENST00000233027 IQGAP2Q13576 1575 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 NEMFO60524 1076 aa15.47■□□□□ 0.07
NEK4-201ENST00000233027 PHAXQ9H814 394 aaKnown RBP15.47■□□□□ 0.07
NEK4-201ENST00000233027 ATP5J2-PTCD1G3V325 749 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 DZIP1Q86YF9 867 aaKnown RBP15.46■□□□□ 0.07
NEK4-201ENST00000233027 HYPKQ9NX55 129 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 ZBTB3Q9H5J0 574 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 ZSCAN22P10073 491 aaPredicted RBP15.46■□□□□ 0.07
NEK4-201ENST00000233027 LIG1P18858 919 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 LRRC2Q9BYS8 371 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 DBF4Q9UBU7 674 aaPredicted RBP15.46■□□□□ 0.07
NEK4-201ENST00000233027 TRMT112Q9UI30 125 aaKnown RBP15.46■□□□□ 0.07
NEK4-201ENST00000233027 SCAF11Q99590 1463 aaKnown RBP15.46■□□□□ 0.07
NEK4-201ENST00000233027 SLC5A1P13866 664 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 GPTP24298 496 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 USP48Q86UV5 1035 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 MICU3Q86XE3 530 aa15.46■□□□□ 0.07
NEK4-201ENST00000233027 ANXA1P04083 346 aa15.46■□□□□ 0.06
NEK4-201ENST00000233027 XRCC6P12956 609 aaKnown RBP eCLIP15.46■□□□□ 0.06
NEK4-201ENST00000233027 EZRP15311 586 aaKnown RBP15.45■□□□□ 0.06
NEK4-201ENST00000233027 MTIF2P46199 727 aaKnown RBP15.45■□□□□ 0.06
NEK4-201ENST00000233027 HSP90AA4PQ58FG1 418 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 IQCA1Q86XH1 822 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 GIMAP7Q8NHV1 300 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 USO1O60763 962 aaKnown RBP15.45■□□□□ 0.06
NEK4-201ENST00000233027 MCM3P25205 808 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 ANO6Q4KMQ2 910 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 TMEM67Q5HYA8 995 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 TCEANC2Q96MN5 208 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 ANKIB1Q9P2G1 1089 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 NOS1P29475 1434 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 CCDC96Q2M329 555 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 UVSSAQ2YD98 709 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 ORC3Q9UBD5 711 aaPredicted RBP15.45■□□□□ 0.06
NEK4-201ENST00000233027 C8orf34Q49A92 452 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 RPRD2Q5VT52 1461 aaKnown RBP15.45■□□□□ 0.06
NEK4-201ENST00000233027 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
NEK4-201ENST00000233027 GOLGA6L10A0A0M3HER8 536 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 CCDC194A0A1B0GVG4 234 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 MCM5P33992 734 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 AMOTQ4VCS5 1084 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 CTNNBL1Q8WYA6 563 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 C16orf71Q8IYS4 520 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 ZNF444Q8N0Y2 327 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 SLC26A6Q9BXS9 759 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 PLB1Q6P1J6 1458 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 WASLO00401 505 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 PAFAH1B1P43034 410 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 CRACR2BQ8N4Y2 399 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 TNNQ9UQP3 1299 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 PI4KAP2A4QPH2 592 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 PI4KAP1Q8N8J0 262 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 MEIS3Q99687 375 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 ANKRD18BA2A2Z9 1011 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 IARSP41252 1262 aaKnown RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 METAP2P50579 478 aaKnown RBP eCLIP15.44■□□□□ 0.06
NEK4-201ENST00000233027 CTR9Q6PD62 1173 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 CATIPQ7Z7H3 387 aa15.44■□□□□ 0.06
NEK4-201ENST00000233027 CCDC12Q8WUD4 166 aaPredicted RBP15.44■□□□□ 0.06
NEK4-201ENST00000233027 DYNC1I1O14576 645 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 LMAN1P49257 510 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 ZNF287Q9HBT7 754 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 CALCOCO1Q9P1Z2 691 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 HDAC1Q13547 482 aaPredicted RBP15.43■□□□□ 0.06
NEK4-201ENST00000233027 GNG11P61952 73 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 HLTFQ14527 1009 aaKnown RBP eCLIP15.43■□□□□ 0.06
NEK4-201ENST00000233027 TMEM266Q2M3C6 531 aa15.43■□□□□ 0.06
NEK4-201ENST00000233027 SMARCC1Q92922 1105 aaPredicted RBP15.42■□□□□ 0.06
NEK4-201ENST00000233027 NEBLO76041 1014 aa15.42■□□□□ 0.06
NEK4-201ENST00000233027 SPTY2D1Q68D10 685 aaPredicted RBP15.42■□□□□ 0.06
NEK4-201ENST00000233027 POTEJP0CG39 1038 aa15.42■□□□□ 0.06
NEK4-201ENST00000233027 GSTTP1A0A1W2PQM5 241 aa15.42■□□□□ 0.06
NEK4-201ENST00000233027 MACROD2A1Z1Q3 448 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms